|
| Status |
Public on Dec 07, 2010 |
| Title |
rosettes_drought_h3k4me2 |
| Sample type |
SRA |
| |
|
| Source name |
Histone H3K4 dimethyl antibody ChIP on vegetative rosettes under drought stress conditions
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
tissue: vegetative rosettes
age: approx. 5 weeks
|
| Growth protocol |
Arabidopsis thaliana cultivar Columbia 0 plants were grown in pots with soil covered with miracloth to prevent soil contamination in 12 hr light for 4 weeks. Control plants continued to receive water while water was withheld from water deficit treated pla
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
See Methods from van Dijk et al. The Plant Cell. 2008 (submitted) for detailed protocol on extract production, immunoprecipitation, and sequencing.
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Description |
rosettes_drought_h3k4me2
|
| Data processing |
See Methods from van Dijk et al. The Plant Cell. 2008 (submitted) for detailed protocol on data processing.
|
| |
|
| Submission date |
Jun 03, 2008 |
| Last update date |
Jun 11, 2013 |
| Contact name |
Jean-Jack M. Riethoven |
| E-mail(s) |
jeanjack@unl.edu
|
| Organization name |
University of Nebraska-Lincoln
|
| Department |
Beadle Center for Biotechnology
|
| Lab |
Bioinformatics Core Research Facility
|
| Street address |
1901 Vine Street
|
| City |
Lincoln |
| State/province |
NE |
| ZIP/Postal code |
68588-0665 |
| Country |
USA |
| |
|
| Platform ID |
GPL9062 |
| Series (2) |
| GSE11657 |
The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation: ChIP-seq data |
| GSE11658 |
The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation |
|
| Relations |
| BioSample |
SAMN02195311 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM296191_H3K4me2_drought.tag_count.only_unique_matching.xls.gz |
247.7 Mb |
(ftp)(http) |
XLS |
| GSM296191_H3K4me2_drought_s_1.tar.gz |
184.0 Mb |
(ftp)(http) |
TAR |
| GSM296191_H3K4me2_drought_s_2.tar.gz |
189.6 Mb |
(ftp)(http) |
TAR |
| GSM296191_H3K4me2_drought_s_3.tar.gz |
186.7 Mb |
(ftp)(http) |
TAR |
| GSM296191_H3K4me2_drought_s_4.tar.gz |
180.3 Mb |
(ftp)(http) |
TAR |
| GSM296191_H3K4me2_drought_s_6.tar.gz |
180.8 Mb |
(ftp)(http) |
TAR |
| GSM296191_H3K4me2_drought_s_7.tar.gz |
185.4 Mb |
(ftp)(http) |
TAR |
| GSM296191_H3K4me2_drought_s_8.tar.gz |
187.4 Mb |
(ftp)(http) |
TAR |
| Raw data provided as supplementary file |
| Processed data provided as supplementary file |
