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Sample GSM296396 Query DataSets for GSM296396
Status Public on Jun 07, 2008
Title gene expression in GV oocyte from aged mice, replicate 3
Sample type RNA
 
Source name GV oocyte from old mice (66 weeks)
Organism Mus musculus
Characteristics fully-grown GV oocyte from 66 weeks old mice
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified using an Picopure kit (Arcturus).
Label biotin
Label protocol total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
 
Hybridization protocol cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
Scan protocol standard Affymetrix procedures
Description Gene expression of GV oocyte from 66 weeks old B6D2 mice
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jun 03, 2008
Last update date Aug 28, 2018
Contact name Hua Pan
E-mail(s) huapan@sas.upenn.edu
Organization name University of Pennsylvania
Department Department of Biology
Street address 415 S University Avenue
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1261
Series (1)
GSE11667 Age-associated increase in aneuploidy and changes in gene expression in mouse eggs.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL absence/presence
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 78.6065 P 0.00159257
AFFX-BioB-M_at 96.0202 P 0.00141043
AFFX-BioB-3_at 48.0206 P 0.00687065
AFFX-BioC-5_at 237.197 P 8.14279e-05
AFFX-BioC-3_at 244.987 P 4.42873e-05
AFFX-BioDn-5_at 439.001 P 4.42873e-05
AFFX-BioDn-3_at 942.186 P 0.000662269
AFFX-CreX-5_at 2584.48 P 5.16732e-05
AFFX-CreX-3_at 3659.99 P 4.42873e-05
AFFX-DapX-5_at 6.81456 A 0.51489
AFFX-DapX-M_at 3.72511 A 0.470241
AFFX-DapX-3_at 11.0641 A 0.340661
AFFX-LysX-5_at 6.18647 A 0.455413
AFFX-LysX-M_at 13.4679 A 0.455413
AFFX-LysX-3_at 10.0604 A 0.116113
AFFX-PheX-5_at 0.683278 A 0.986189
AFFX-PheX-M_at 0.632107 A 0.883887
AFFX-PheX-3_at 4.53514 A 0.574038
AFFX-ThrX-5_at 3.15424 A 0.783476
AFFX-ThrX-M_at 1.56238 A 0.868639

Total number of rows: 45101

Table truncated, full table size 1363 Kbytes.




Supplementary file Size Download File type/resource
GSM296396.cel.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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