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Sample GSM297400 Query DataSets for GSM297400
Status Public on May 18, 2009
Title A. niger Glucose pH 2.5 rep 2
Sample type RNA
 
Source name A. niger mycelium grown on a glucose medium at 2.5
Organism Aspergillus niger
Characteristics Dispersed liquid culture grown at pH 2.5
Extracted molecule total RNA
Extraction protocol Affymetrix standard
Label Affymetrix standard
Label protocol Affymetrix standard
 
Hybridization protocol Affymetrix standard
Scan protocol Affymetrix standard
Description Part of a study of the response to three levels of ambient pH.
Data processing Data processed with R 2.5.1 according to the protocol of Andersen MR, Vongsangnak W, Panagiotou G, Salazar MP, Lehmann L, Nielsen J. Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4387-92. PMID: 18332432
 
Submission date Jun 08, 2008
Last update date May 18, 2009
Contact name Mikael R Andersen
E-mail(s) mr@bio.dtu.dk
Organization name Technical University of Denmark
Department BioCentrum-DTU
Lab Center for Microbial Biotechnology
Street address Søltofts plads, bygn 223
City Kgs. Lyngby
ZIP/Postal code 2800
Country Denmark
 
Platform ID GPL5975
Series (1)
GSE11725 Study of the response of Aspergillus niger to three levels of ambient pH

Data table header descriptions
ID_REF
VALUE RMA normalized and log2-transformed expression value indexes

Data table
ID_REF VALUE
JGI118581_at 5.4218666
JGI118598_at 5.328444223
JGI118599_at 7.631065645
JGI118601_at 6.089310568
JGI118617_at 5.418680765
JGI118624_at 10.38447169
JGI118629_at 5.691231306
JGI118635_at 6.994344252
JGI118644_at 7.056340116
JGI118659_at 7.178331915
JGI118662_at 5.160348607
JGI118666_at 6.662602261
JGI118704_at 9.911572873
JGI118744_at 7.014705246
JGI118750_at 7.835932784
JGI118758_at 7.776146165
JGI118832_at 9.810824253
JGI118837_at 6.339384422
JGI118881_at 7.699372064
JGI118888_at 8.592764427

Total number of rows: 11122

Table truncated, full table size 264 Kbytes.




Supplementary file Size Download File type/resource
GSM297400.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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