GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM304398 Query DataSets for GSM304398
Status Public on Oct 02, 2009
Title blood_responder_patient3
Sample type RNA
Source name Rheumatoid arthritis patient, whole blood, at 8:30-9:30 morning
Organism Homo sapiens
Characteristics disease state: responder
gender: female
tissue: whole blood
treatment stage: baseline (prior infliximab infusion)
Treatment protocol Paxgene tube conservation at -80ºC
Extracted molecule total RNA
Extraction protocol Whole blood RNA was extracted from whole blood preserved in Paxgene tubes using the PAXgene RNA Isolation kit (Qiagen)
Label Biotin
Label protocol Biotin labeled cRNA preparation for the Illumina platform was performed using the Ambion(r) Illumina RNA amplification kit (Ambion Europe, Huntington, Cambridgeshire, UK).
Hybridization protocol Biotin labeled cRNA (1.5ug) was hybridized to Sentrix(r) whole genome bead chips 6 x 2 (Illumina, San Diego, CA, USA)
Scan protocol Scanning was performed on the Illumina(r) BeadStation 500x.
Description Whole blood RNA, Infliximab responder
Data processing Log2 transformation of BeadStudio raw data, gene filtering of Beadchip version2 RefSeq valid probes, quantile normalization using R.
Submission date Jul 09, 2008
Last update date Mar 29, 2010
Contact name Antonio Julià
Phone +34 934029082
Organization name Vall d'Hebron Hospital Research Institute
Department Rheumatology Research Group
Lab Rheumatology Research Group
Street address c/ Baldiri Reixac nº15
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
Platform ID GPL2507
Series (1)
GSE12051 Microarray predictor of response to infliximab in rheumatoid arthritis (RA) patients

Data table header descriptions
VALUE Quantile normalized signal intensity

Data table
GI_10047089-S 6.58123323443008
GI_10047091-S 6.77817053473129
GI_10047093-S 6.63673938713681
GI_10047099-S 6.56324682895417
GI_10047103-S 8.63827288871818
GI_10047123-S 7.15243905680992
GI_10047133-I 6.62345256320171
GI_10092578-S 6.43444771657644
GI_10092585-S 6.84518232851811
GI_10092596-S 7.42753550323825
GI_10092600-S 7.24544996850967
GI_10092602-S 6.43291842798576
GI_10092611-A 7.55133786718016
GI_10092616-S 6.58842268150887
GI_10092618-S 9.50382146104653
GI_10092638-S 6.45900559431696
GI_10092658-S 6.81007035249124
GI_10092668-S 6.45777079410883
GI_10092672-S 7.28581280165588
GI_10190657-S 6.59913408148828

Total number of rows: 17454

Table truncated, full table size 522 Kbytes.

Supplementary file Size Download File type/resource
GSM304398.txt.gz 220.7 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap