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Sample GSM3045521 Query DataSets for GSM3045521
Status Public on Oct 14, 2018
Title genomic DNA from healthy control C03
Sample type genomic
 
Source name C03
Organism Homo sapiens
Characteristics gender: female
tissue: peripheral blood mononuclear
disease state: healthy control
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description healthy control
SAMPLE 28
Data processing BeadStudio software v3.2
 
Submission date Mar 16, 2018
Last update date Oct 14, 2018
Contact name Xingbo Mo
E-mail(s) moxingbo26@163.com
Organization name Soochow University
Street address Renai Road
City Suzhou
ZIP/Postal code 215123
Country China
 
Platform ID GPL13534
Series (1)
GSE111942 Rheumatoid arthritis associated DNA methylation sites in peripheral blood mononuclear cells

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg00000029 0.632
cg00000108 0.973
cg00000109 0.936
cg00000165 0.21
cg00000236 0.914
cg00000289 0.771
cg00000292 0.932
cg00000321 0.259
cg00000363 0.396
cg00000622 0.017
cg00000658 0.877
cg00000714 0.237
cg00000721 0.98
cg00000734 0.027
cg00000769 0.048
cg00000807 0.827
cg00000884 0.937
cg00000905 0.065
cg00000924 0.681
cg00000948 0.942

Total number of rows: 484770

Table truncated, full table size 8010 Kbytes.




Supplementary file Size Download File type/resource
GSM3045521_3999356108_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM3045521_3999356108_R05C01_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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