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Sample GSM3045534 Query DataSets for GSM3045534
Status Public on Oct 14, 2018
Title genomic DNA from healthy control C16
Sample type genomic
 
Source name C16
Organism Homo sapiens
Characteristics gender: female
tissue: peripheral blood mononuclear
disease state: healthy control
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description healthy control
SAMPLE 41
Data processing BeadStudio software v3.2
 
Submission date Mar 16, 2018
Last update date Oct 14, 2018
Contact name Xingbo Mo
E-mail(s) moxingbo26@163.com
Organization name Soochow University
Street address Renai Road
City Suzhou
ZIP/Postal code 215123
Country China
 
Platform ID GPL13534
Series (1)
GSE111942 Rheumatoid arthritis associated DNA methylation sites in peripheral blood mononuclear cells

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg00000029 0.546
cg00000108 0.993
cg00000109 0.969
cg00000165 0.179
cg00000236 0.893
cg00000289 0.812
cg00000292 0.931
cg00000321 0.233
cg00000363 0.329
cg00000622 0.02
cg00000658 0.842
cg00000714 0.21
cg00000721 0.974
cg00000734 0.045
cg00000769 0.067
cg00000807 0.864
cg00000884 0.937
cg00000905 0.052
cg00000924 0.677
cg00000948 0.938

Total number of rows: 484770

Table truncated, full table size 8009 Kbytes.




Supplementary file Size Download File type/resource
GSM3045534_3999356134_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM3045534_3999356134_R05C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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