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Sample GSM30673 Query DataSets for GSM30673
Status Public on Oct 15, 2004
Title DMD Subject 2, post-oxandrolone, HU133A
Sample type RNA
 
Source name DMD muscle biopsy
Organism Homo sapiens
Extracted molecule total RNA
 
Description Subject with Duchenne Muscular Dystrophy, after 3-month treatment with oxandrolone (0.1mg/kg/day). Messenger RNA isolated from a gastrocnemius muscle needle biopsy was linearly amplified (two rounds) and biotin-labeled using the protocol of Baugh, et al (Baugh, L. R., Hill, A. A., Brown, E. L., and Hunter, C. P. Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res 29(5), E29. 2001). Labeled RNA was hybridized to array using Affymetrix' protocol.
Keywords = muscle
Keywords = Duchenne muscular dystrophy
Keywords = oxandrolone
Keywords = androgen
 
Submission date Sep 15, 2004
Last update date May 27, 2005
Contact name Robert C. Olney
E-mail(s) rolney@nemours.org
Phone 904-390-3674
Fax 904-858-3948
Organization name Nemours Children's Clinic
Department Pediatrics
Lab Cellular and Molecular Laboratory
Street address 807 Children's Way
City Jacksonville
State/province FL
ZIP/Postal code 32207
Country USA
 
Platform ID GPL96
Series (1)
GSE1764 Effect of Oxandrolone on Muscle in Duchenne Muscular Dystrophy

Data table header descriptions
ID_REF
VALUE signal as determined by Affymetrix MAS
ABS_CALL call (A, M, P)(absent, marginal, present) as determined by Affymetrix MAS

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1211.9 P
AFFX-BioB-M_at 3096.2 P
AFFX-BioB-3_at 1557.9 P
AFFX-BioC-5_at 2849 P
AFFX-BioC-3_at 2660.8 P
AFFX-BioDn-5_at 3474.7 P
AFFX-BioDn-3_at 19364.5 P
AFFX-CreX-5_at 29221.6 P
AFFX-CreX-3_at 39266.5 P
AFFX-DapX-5_at 31.9 A
AFFX-DapX-M_at 29.8 A
AFFX-DapX-3_at 10 A
AFFX-LysX-5_at 16.6 A
AFFX-LysX-M_at 104.3 A
AFFX-LysX-3_at 8 A
AFFX-PheX-5_at 10.2 A
AFFX-PheX-M_at 3 A
AFFX-PheX-3_at 182.9 A
AFFX-ThrX-5_at 37.5 A
AFFX-ThrX-M_at 38.3 A

Total number of rows: 22283

Table truncated, full table size 403 Kbytes.




Supplementary data files not provided

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