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Sample GSM3093 Query DataSets for GSM3093
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-6, tumor tissue, 2nd repetition
Sample type RNA
 
Source name Gastrointestinal Stroma Tumor
Organism Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-6
sex=f
age=72
birthyear=1928
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211245 reuse=3 date=29-Nov-2000
 
Submission date Dec 11, 2002
Last update date Jun 17, 2014
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL9
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 402942 611524 -208582
2 778291 611524 166767
3 688487 611524 76963
4 351266 611524 -260258
5 906209 611524 294685
6 14180042 611524 13568518
7 14172096 611524 13560572
8 505215 611524 -106309
9 337652 611524 -273872
10 433916 611524 -177608
11 1254508 611524 642984
12 625852 611524 14328
13 19401652 611524 18790128
14 578997 611524 -32527
15 631807 611524 20283
16 685845 611524 74321
17 617028 567009 50019
18 763820 567009 196811
19 625337 567009 58328
20 323938 567009 -243071

Total number of rows: 36864

Table truncated, full table size 975 Kbytes.




Supplementary data files not provided

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