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Sample GSM3113 Query DataSets for GSM3113
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-19, tumor tissue, 1st repetition
Sample type RNA
 
Source name Gastrointestinal Stroma Tumor
Organism Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-19
sex=m
age=53
birthyear=1956
stage=primary
type=GIST
tumorsite=rectum
survival_months=10
died=no
tumorsize.cm=8
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=14
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from rectum
Lot batch = filter=36211241 reuse=4 date=01-Feb-2001
 
Submission date Dec 11, 2002
Last update date Jun 17, 2014
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL9
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 1609573 1212201 397372
2 1238224 1212201 26023
3 1727758 1212201 515557
4 1047781 1212201 -164420
5 1222720 1212201 10519
6 29120064 1212201 27907863
7 93838552 1212201 92626351
8 1638493 1212201 426292
9 2453052 1212201 1240851
10 830679 1212201 -381522
11 1311510 1212201 99309
12 2231769 1212201 1019568
13 76345256 1212201 75133055
14 1141557 1212201 -70644
15 661557 1212201 -550644
16 1017773 1212201 -194428
17 1342118 1151329 190789
18 1487163 1151329 335834
19 1726277 1151329 574948
20 1085010 1151329 -66319

Total number of rows: 36864

Table truncated, full table size 1046 Kbytes.




Supplementary data files not provided

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