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Sample GSM3119 Query DataSets for GSM3119
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-1, tumor tissue, 1st repetition [2]
Sample type RNA
 
Source name Gastrointestinal Stroma Tumor
Organism Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-1
sex=m
age=67
birthyear=1929
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=2
CD34_expression=no
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=NaN
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624121 reuse=2 date=12-Sep-2000
 
Submission date Dec 11, 2002
Last update date Jun 17, 2014
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL10
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 310903 379456 -68553
2 486988 379456 107532
3 456233 379456 76777
4 314960 379456 -64496
5 515285 379456 135829
6 3965651 379456 3586195
7 1332016 379456 952560
8 744457 379456 365001
9 358453 379456 -21003
10 714876 379456 335420
11 249299 379456 -130157
12 309406 379456 -70050
13 1185443 379456 805987
14 257705 379456 -121751
15 285398 379456 -94058
16 385404 379456 5948
17 5377351 549081 4828270
18 425069 549081 -124012
19 4543082 549081 3994001
20 541728 549081 -7353

Total number of rows: 36864

Table truncated, full table size 1009 Kbytes.




Supplementary data files not provided

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