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Sample GSM3124 Query DataSets for GSM3124
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-2, tumor tissue, 2nd repetition [2]
Sample type RNA
 
Source name Gastrointestinal Stroma Tumor
Organism Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-2
sex=m
age=70
birthyear=1926
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624124 reuse=3 date=19-Nov-2000
 
Submission date Dec 11, 2002
Last update date Jun 17, 2014
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL10
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 487337 268324 219013
2 425072 268324 156748
3 154865 268324 -113459
4 377780 268324 109456
5 403666 268324 135342
6 7966372 268324 7698048
7 527121 268324 258797
8 150694 268324 -117630
9 323730 268324 55406
10 494662 268324 226338
11 174838 268324 -93486
12 67840 268324 -200484
13 408736 268324 140412
14 212340 268324 -55984
15 114394 268324 -153930
16 219404 268324 -48920
17 2137140 369664 1767476
18 393805 369664 24141
19 519276 369664 149612
20 371339 369664 1675

Total number of rows: 36864

Table truncated, full table size 977 Kbytes.




Supplementary data files not provided

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