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GEO accession:
Sample GSM312485
Query DataSets for GSM312485
Status
Public on Sep 28, 2010
Title
2652_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(NIPPON GENE)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 13, 2008
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Data table
ID_REF
Raw_intensity
VALUE
1001
5937.125
116.8215
1002
254.5882
5.0094
1003
22.2667
0.4381
1004
26.0508
0.5126
1005
22.2656
0.4381
1006
25.7164
0.506
1007
34.4429
0.6777
1008
6053.3291
119.1079
1009
318.8261
6.2734
1010
187.95
3.6982
1011
45.7533
0.9003
1012
43.5972
0.8578
1013
24.7703
0.4874
1014
29.6812
0.584
1015
5852.9253
115.1647
1016
53.1842
1.0465
1017
27.3235
0.5376
1018
24.2742
0.4776
1019
20.3276
0.4
1020
21.7241
0.4275
Total number of rows:
54359
Table truncated, full table size
1166 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM312485.txt.gz
2.2 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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