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GEO accession:
Sample GSM312489
Query DataSets for GSM312489
Status
Public on Mar 23, 2015
Title
2790_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(NIPPON GENE)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 13, 2008
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Data table
ID_REF
Raw_intensity
VALUE
1001
7313.0532
195.8021
1002
114
3.0523
1003
27
0.7229
1004
33.3607
0.8932
1005
28.8525
0.7725
1006
29.8269
0.7986
1007
27.7576
0.7432
1008
7512.0229
201.1294
1009
215.2195
5.7624
1010
89.7571
2.4032
1011
37.6769
1.0088
1012
37.75
1.0107
1013
30.873
0.8266
1014
28.2909
0.7575
1015
7569.6177
202.6715
1016
42.8261
1.1466
1017
26.1333
0.6997
1018
27.8
0.7443
1019
26.2581
0.703
1020
26.4717
0.7088
Total number of rows:
54359
Table truncated, full table size
1158 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM312489.txt.gz
2.2 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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