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Sample GSM3128 Query DataSets for GSM3128
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-3, tumor tissue, 2nd repetition [2]
Sample type RNA
 
Source name Gastrointestinal Stroma Tumor
Organism Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-3
sex=f
age=80
birthyear=1917
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=4
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624131 reuse=3 date=19-Nov-2000
 
Submission date Dec 11, 2002
Last update date Jun 17, 2014
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL10
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 274829 148996 125833
2 164529 148996 15533
3 104420 148996 -44576
4 241697 148996 92701
5 204930 148996 55934
6 2941275 148996 2792279
7 79880 148996 -69116
8 65710 148996 -83286
9 168967 148996 19971
10 138924 148996 -10072
11 190453 148996 41457
12 178481 148996 29485
13 164307 148996 15311
14 165401 148996 16405
15 46223 148996 -102773
16 134746 148996 -14250
17 1730305 164836 1565469
18 94990 164836 -69846
19 190278 164836 25442
20 90678 164836 -74158

Total number of rows: 36864

Table truncated, full table size 972 Kbytes.




Supplementary data files not provided

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