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GEO accession:
Sample GSM314291
Query DataSets for GSM314291
Status
Public on Sep 28, 2010
Title
785_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(NIPPON GENE)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 21, 2008
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Data table
ID_REF
Raw_intensity
VALUE
1001
17600.0547
124.3551
1002
1266.22
8.9466
1003
22.74
0.1607
1004
37.0159
0.2615
1005
19.525
0.138
1006
46.7101
0.33
1007
32.6852
0.2309
1008
15390.7383
108.7449
1009
311.0952
2.1981
1010
930.262
6.5729
1011
135.76
0.9592
1012
277.4533
1.9604
1013
70.5797
0.4987
1014
41.1803
0.291
1015
15262.59
107.8395
1016
215.7949
1.5247
1017
49.3913
0.349
1018
27.1333
0.1917
1019
23.74
0.1677
1020
76.7273
0.5421
Total number of rows:
54359
Table truncated, full table size
1180 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM314291.txt.gz
2.4 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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