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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Aug 09, 2018 |
| Title |
24hr 24a |
| Sample type |
SRA |
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| Source name |
Rhizopus delemar culture
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| Organism |
Rhizopus delemar |
| Characteristics |
strain: RA 99-880
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| Treatment protocol |
Sabouraud dextrose agar or broth (10 g/L mycological peptone, 20 g/L dextrose)
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| Growth protocol |
Sabouraud dextrose agar or broth (10 g/L mycological peptone, 20 g/L dextrose)
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
Trizol, RNEasy Total RNA Extraction, followed by PolyA+ Purification
NEBNextera
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Description |
24a
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| Data processing |
Alignment: Hisat2
Count: HTSeq
EdgeR: Analysis
Genome_build: Rhizopus delemar strain RA 99-880
Supplementary_files_format_and_content: Count Matrix
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| Submission date |
May 23, 2018 |
| Last update date |
Aug 09, 2018 |
| Contact name |
Poppy Sephton Clark |
| E-mail(s) |
psephtonclark@gmail.com
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| Phone |
07538713486
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| Organization name |
University of Birmingham
|
| Department |
IMI
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| Lab |
Ballou
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| Street address |
University of Birmingham
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| City |
Birmingham |
| State/province |
West Midlands |
| ZIP/Postal code |
B152TT |
| Country |
United Kingdom |
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| Platform ID |
GPL25021 |
| Series (1) |
| GSE114842 |
RNA sequencing of germinating Rhizopus delemar strain RA 99-880 |
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| Relations |
| BioSample |
SAMN09244054 |
| SRA |
SRX4117514 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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