NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM3160 Query DataSets for GSM3160
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-19, tumor tissue, 1st repetition [2]
Sample type RNA
 
Source name Gastrointestinal Stroma Tumor
Organism Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-19
sex=m
age=53
birthyear=1956
stage=primary
type=GIST
tumorsite=rectum
survival_months=10
died=no
tumorsize.cm=8
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=14
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from rectum
Lot batch = filter=3624133 reuse=4 date=01-Feb-2001
 
Submission date Dec 12, 2002
Last update date May 27, 2005
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL10
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 436769 401956 34813
2 359820 401956 -42136
3 326491 401956 -75465
4 382832 401956 -19124
5 487042 401956 85086
6 8169866 401956 7767910
7 526547 401956 124591
8 370739 401956 -31217
9 343927 401956 -58029
10 499158 401956 97202
11 481949 401956 79993
12 258246 401956 -143710
13 507810 401956 105854
14 418801 401956 16845
15 329775 401956 -72181
16 318742 401956 -83214
17 2782101 490000 2292101
18 765933 490000 275933
19 742426 490000 252426
20 286936 490000 -203064

Total number of rows: 36864

Table truncated, full table size 982 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap