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Sample GSM3161 Query DataSets for GSM3161
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-20, tumor tissue, 1st repetition [2]
Sample type RNA
 
Source name Gastrointestinal Stroma Tumor
Organism Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-20
sex=f
age=65
birthyear=1934
stage=primary
type=GIST
tumorsite=stomach
survival_months=18
died=no
tumorsize.cm=5
CD34_expression=yes
SMA_expression=no
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=yes
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624131 reuse=4 date=23-Jan-2001
 
Submission date Dec 12, 2002
Last update date May 27, 2005
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL10
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 294457 283024 11433
2 347793 283024 64769
3 364203 283024 81179
4 255464 283024 -27560
5 316207 283024 33183
6 4929959 283024 4646935
7 540341 283024 257317
8 203698 283024 -79326
9 300164 283024 17140
10 256407 283024 -26617
11 304588 283024 21564
12 270284 283024 -12740
13 322974 283024 39950
14 240878 283024 -42146
15 258451 283024 -24573
16 248698 283024 -34326
17 1721835 289444 1432391
18 326033 289444 36589
19 397175 289444 107731
20 300011 289444 10567

Total number of rows: 36864

Table truncated, full table size 975 Kbytes.




Supplementary data files not provided

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