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Sample GSM31781 Query DataSets for GSM31781
Status Public on Nov 01, 2004
Title Fig5 AO fresh rep3
Sample type RNA
 
Source name anaplastic oligodendroglioma, fresh tissue
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 5, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 6140 8290 150 2607 2588 258 3008 3013 277 0 0 0 156 1272 -401 -420 -401 -420 -50
101285 1 1 2 mmu-mir-23b 6140 8690 150 2063 2131 296 2705 2690 194 4 0 0 156 1272 -642 -574 -642 -574 -50
101021 1 1 3 mmu-mir-125b 6150 9090 160 8351 7902 1916 2621 2763 861 90 89 0 208 1512 5730 5281 5730 5281 0
100751 1 1 4 miR-106a 6160 9500 150 3162 3166 249 2700 2710 176 92 71 0 156 1272 462 466 462 466 100
100475 1 1 5 hsa-mir-211 6140 9890 150 1967 1955 214 2449 2368 278 0 0 0 156 1272 -482 -494 -482 -494 -50
100115 1 1 6 ath-miR319 6140 10320 100 3637 3569 360 2406 2401 226 97 95 0 80 560 1231 1163 1231 1163 100
101381 1 1 7 rno-miR-325 6140 10690 150 2381 2404 262 2612 2615 155 10 3 0 156 1272 -231 -208 -231 -208 -50
101117 1 1 8 mmu-mir-145 6140 11090 150 2664 2675 155 2621 2607 178 15 3 0 156 1272 43 54 43 54 -50
100020 1 2 1 ath-miR158 6540 8290 150 2683 2630 345 3069 3052 220 0 0 0 156 1272 -386 -439 -386 -439 -50
101286 1 2 2 mmu-mir-23b 6540 8690 150 2157 2193 322 2725 2729 213 3 0 0 156 1272 -568 -532 -568 -532 -50
101022 1 2 3 mmu-mir-125b 6560 9090 150 8459 8411 792 2678 2881 1029 100 100 0 156 1272 5781 5733 5781 5733 0
100752 1 2 4 miR-106a 6540 9490 150 3108 3024 356 2684 2712 196 75 58 0 156 1272 424 340 424 340 100
100476 1 2 5 hsa-mir-211 6540 9890 150 2059 2043 206 2436 2381 266 0 0 0 156 1272 -377 -393 -377 -393 -50
100116 1 2 6 ath-miR319 6540 10290 150 3419 3324 512 2437 2434 187 86 83 0 156 1272 982 887 982 887 -50
101382 1 2 7 rno-miR-325 6540 10690 150 2112 2129 189 2525 2532 263 0 0 0 156 1272 -413 -396 -413 -396 -50
101118 1 2 8 mmu-mir-145 6540 11090 150 2608 2227 758 2646 2647 165 12 3 0 156 1272 -38 -419 -38 -419 -50
100403 1 3 1 hsa-mir-197 6940 8290 150 2074 2122 321 3253 3221 232 0 0 0 156 1272 -1179 -1131 -1179 -1131 -50
100043 1 3 2 ath-miR161 6940 8690 150 2247 2255 191 2782 2807 246 0 0 0 156 1272 -535 -527 -535 -527 -50
101309 1 3 3 mmu-mir-30e 6940 9090 150 2470 2473 177 2658 2684 249 1 0 0 156 1272 -188 -185 -188 -185 -100
101045 1 3 4 mmu-mir-132 6940 9490 150 2053 2041 123 2603 2572 201 0 0 0 156 1272 -550 -562 -550 -562 -50

Total number of rows: 1536

Table truncated, full table size 154 Kbytes.




Supplementary data files not provided
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