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Sample GSM31785 Query DataSets for GSM31785
Status Public on Nov 01, 2004
Title Fig5 Jurkat rep1
Sample type RNA
 
Source name Jurkat cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 5, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (532/1) sum of medians
Sum of Means (532/1) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (532/1) Sum of Means (532/1) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 7020 7860 150 1799 1845 183 9 2061 2061 2045 176 8 0 0 0 156 1272 100 -262 -216 -262 -216 287764 -1.136 -50
101285 1 1 2 mmu-mir-23b 7020 8260 150 1713 1721 235 13 2089 2089 2265 1061 46 0 0 0 156 1272 100 -376 -368 -376 -368 268437 -0.513 -50
101021 1 1 3 mmu-mir-125b 7020 8660 150 1594 1648 227 13 1952 1952 1915 189 9 1 0 0 156 1272 100 -358 -304 -358 -304 257088 -1.413 -50
100751 1 1 4 miR-106a 7020 9110 180 3230 3235 276 8 2022 2022 2033 180 8 100 99 0 373 1722 67 1208 1213 1208 1213 1206769 6.678 0
100475 1 1 5 hsa-mir-211 7020 9460 150 1721 1801 252 13 2049 2049 2031 236 11 3 0 0 156 1272 100 -328 -248 -328 -248 280959 -0.975 -50
100115 1 1 6 ath-miR319 6990 9870 150 2006 2115 610 28 2181 2181 2185 159 7 9 7 0 156 1272 100 -175 -66 -175 -66 329876 -0.44 100
101381 1 1 7 rno-miR-325 7020 10260 150 1848 1913 311 16 2208 2208 2207 246 11 1 0 0 156 1272 100 -360 -295 -360 -295 298381 -1.195 -50
101117 1 1 8 mmu-mir-145 7020 10660 150 2094 2087 193 9 2116 2116 2116 239 11 2 0 0 156 1272 100 -22 -29 -22 -29 325622 -0.121 -50
100020 1 2 1 ath-miR158 7420 7860 150 1790 1792 184 10 1999 1999 2003 171 8 1 0 0 156 1272 100 -209 -207 -209 -207 279506 -1.234 -50
101286 1 2 2 mmu-mir-23b 7420 8260 150 1710 1735 243 14 2143 2143 2315 907 39 0 0 0 156 1272 100 -433 -408 -433 -408 270687 -0.639 -50
101022 1 2 3 mmu-mir-125b 7420 8660 150 1670 1714 350 20 2149 2149 2407 1224 50 0 0 0 156 1272 100 -479 -435 -479 -435 267361 -0.566 -50
100752 1 2 4 miR-106a 7430 9090 170 3126 3165 242 7 2034 2034 2029 168 8 100 100 0 309 1459 0 1092 1131 1092 1131 977929 6.762 0
100476 1 2 5 hsa-mir-211 7420 9460 150 1627 1641 138 8 1975 1975 1955 238 12 0 0 0 156 1272 100 -348 -334 -348 -334 256042 -1.319 -50
100116 1 2 6 ath-miR319 7370 9870 150 2143 2175 219 10 2198 2198 2252 257 11 10 3 0 156 1272 100 -55 -23 -55 -23 339345 -0.3 100
101382 1 2 7 rno-miR-325 7420 10260 150 1813 1854 220 11 2242 2242 2240 190 8 0 0 0 156 1272 100 -429 -388 -429 -388 289287 -2.032 -50
101118 1 2 8 mmu-mir-145 7420 10660 150 2292 2276 214 9 2220 2220 2202 193 8 14 0 0 156 1272 100 72 56 72 56 354981 0.383 -50
100403 1 3 1 hsa-mir-197 7820 7860 150 1440 1583 341 21 2006 2006 1947 258 13 0 0 0 156 1272 100 -566 -423 -566 -423 246967 -1.411 -50
100043 1 3 2 ath-miR161 7810 8220 90 4324 5096 1918 37 2190 2190 2307 705 30 100 76 0 64 384 89 2134 2906 2134 2906 326148 3.956 0
101309 1 3 3 mmu-mir-30e 7800 8680 150 2071 2066 165 7 2197 2197 2358 751 31 0 0 0 156 1272 100 -126 -131 -126 -131 322345 -0.389 100
101045 1 3 4 mmu-mir-132 7820 9060 150 1681 1745 228 13 2074 2074 2031 201 9 1 0 0 156 1272 100 -393 -329 -393 -329 272157 -1.423 -50

Total number of rows: 1536

Table truncated, full table size 198 Kbytes.




Supplementary data files not provided
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