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Sample GSM31786 Query DataSets for GSM31786
Status Public on Nov 01, 2004
Title Fig5 Jurkat rep2
Sample type RNA
 
Source name Jurkat cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 5, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 7210 7680 150 2558 2602 353 13 3079 3079 3035 306 10 1 1 0 156 1272 100 -521 -477 -521 -477 405988 -1.415 -50
101285 1 1 2 mmu-mir-23b 7210 8080 150 2374 2380 289 12 3023 3023 2966 268 9 0 0 0 156 1272 100 -649 -643 -649 -643 371207 -2.187 -50
101021 1 1 3 mmu-mir-125b 7210 8480 150 2258 2279 265 11 3023 3023 2935 340 11 0 0 0 156 1272 100 -765 -744 -765 -744 355569 -1.929 -50
100751 1 1 4 miR-106a 7270 8920 190 4080 4109 280 6 3061 3061 3134 370 11 98 88 0 256 2025 100 1019 1048 1019 1048 1051908 2.635 0
100475 1 1 5 hsa-mir-211 7210 9280 150 2328 2403 337 14 3002 3002 2963 394 13 1 0 0 156 1272 100 -674 -599 -674 -599 374841 -1.421 -50
100115 1 1 6 ath-miR319 7210 9680 150 2753 2775 259 9 2997 2997 3000 205 6 4 0 0 156 1272 100 -244 -222 -244 -222 432946 -1.098 -50
101381 1 1 7 rno-miR-325 7210 10080 150 2287 2432 427 17 2954 2954 2954 312 10 3 1 0 156 1272 100 -667 -522 -667 -522 379452 -1.673 -50
101117 1 1 8 mmu-mir-145 7210 10480 150 3287 3280 303 9 3262 3262 3259 192 5 21 4 0 156 1272 100 25 18 25 18 511652 0.109 -50
100020 1 2 1 ath-miR158 7610 7680 150 2759 2740 253 9 3373 3373 3849 1415 36 0 0 0 156 1272 100 -614 -633 -614 -633 427514 -0.784 -50
101286 1 2 2 mmu-mir-23b 7610 8080 150 2362 2375 280 11 3116 3116 3135 441 14 0 0 0 156 1272 100 -754 -741 -754 -741 370476 -1.723 -50
101022 1 2 3 mmu-mir-125b 7610 8480 150 2478 2590 398 15 3215 3215 3370 1240 36 0 0 0 156 1265 100 -737 -625 -737 -625 403974 -0.629 -50
100752 1 2 4 miR-106a 7610 8890 180 4119 4077 391 9 3141 3141 3196 299 9 93 89 0 256 1880 100 978 936 978 936 1043680 2.946 100
100476 1 2 5 hsa-mir-211 7610 9280 150 2305 2353 295 12 3122 3122 3095 325 10 1 0 0 156 1272 100 -817 -769 -817 -769 367084 -2.283 -50
100116 1 2 6 ath-miR319 7610 9680 150 2676 2726 309 11 3022 3022 3032 226 7 6 1 0 156 1272 100 -346 -296 -346 -296 425232 -1.354 -50
101382 1 2 7 rno-miR-325 7610 10080 150 2445 2489 330 13 3098 3098 3109 235 7 0 0 0 156 1272 100 -653 -609 -653 -609 388229 -2.638 -50
101118 1 2 8 mmu-mir-145 7610 10480 150 3241 3240 155 4 3224 3224 3229 177 5 11 1 0 156 1272 100 17 16 17 16 505457 0.062 -50
100403 1 3 1 hsa-mir-197 8010 7680 150 2294 2427 523 21 3616 3616 4378 2832 64 0 0 0 156 1272 100 -1322 -1189 -1322 -1189 378631 -0.689 -50
100043 1 3 2 ath-miR161 8010 8080 150 2928 2951 349 11 3497 3497 3525 503 14 0 0 0 156 1272 100 -569 -546 -569 -546 460388 -1.141 -50
101309 1 3 3 mmu-mir-30e 7950 8460 230 6737 7904 3139 39 3435 3435 3565 538 15 100 99 0 392 2937 100 3302 4469 3302 4469 3098343 8.065 -100
101045 1 3 4 mmu-mir-132 8010 8880 150 3354 3379 394 11 3590 3590 3677 575 15 5 0 0 156 1272 100 -236 -211 -236 -211 527183 -0.518 -50

Total number of rows: 1536

Table truncated, full table size 200 Kbytes.




Supplementary data files not provided
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