NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM31787 Query DataSets for GSM31787
Status Public on Nov 01, 2004
Title Fig5 Jurkat rep3
Sample type RNA
 
Source name Jurkat cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 5, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 7210 7680 150 2704 2704 109 4 2695 2695 2700 152 5 9 0 0 156 1272 100 9 9 9 9 421857 0.026 -50
101285 1 1 2 mmu-mir-23b 7210 8080 150 2183 2185 170 7 2502 2502 2496 250 10 0 0 0 156 1272 100 -319 -317 -319 -317 340921 -1.244 -50
101021 1 1 3 mmu-mir-125b 7210 8480 150 2061 2108 284 13 2454 2454 2438 227 9 1 0 0 156 1272 100 -393 -346 -393 -346 328838 -1.454 -50
100751 1 1 4 miR-106a 7210 8880 150 1911 1957 273 13 2397 2397 2366 210 8 2 0 0 156 1272 100 -486 -440 -486 -440 305254 -1.948 -50
100475 1 1 5 hsa-mir-211 7220 9320 200 3309 3323 287 8 2366 2366 2384 183 7 98 96 0 316 2311 100 943 957 943 957 1050208 5.131 0
100115 1 1 6 ath-miR319 7210 9680 150 1942 1986 228 11 2385 2385 2568 683 26 0 0 0 156 1272 100 -443 -399 -443 -399 309829 -0.852 -50
101381 1 1 7 rno-miR-325 7210 10080 150 2448 2470 243 9 2483 2483 2623 546 20 3 0 0 156 1272 100 -35 -13 -35 -13 385338 -0.28 -50
101117 1 1 8 mmu-mir-145 7210 10480 150 2113 2156 242 11 2412 2412 2415 245 10 2 0 0 156 1272 100 -299 -256 -299 -256 336346 -1.057 -50
100020 1 2 1 ath-miR158 7610 7680 150 2846 2854 142 4 2846 2846 2867 227 7 5 0 0 156 1272 100 0 8 0 8 445230 -0.057 -50
101286 1 2 2 mmu-mir-23b 7610 8080 150 2172 2170 218 10 2443 2443 2452 303 12 0 0 0 156 1272 100 -271 -273 -271 -273 338463 -0.931 -50
101022 1 2 3 mmu-mir-125b 7610 8480 150 1977 1984 273 13 2341 2341 2326 198 8 2 0 0 156 1272 100 -364 -357 -364 -357 309469 -1.727 -50
100752 1 2 4 miR-106a 7610 8880 150 1885 1933 262 13 2354 2354 2328 215 9 2 0 0 156 1272 100 -469 -421 -469 -421 301532 -1.837 -50
100476 1 2 5 hsa-mir-211 7590 9330 180 3352 3336 221 6 2363 2363 2396 226 9 99 98 0 256 1905 100 989 973 989 973 854098 4.159 0
100116 1 2 6 ath-miR319 7650 9780 210 3645 3808 735 19 2577 2577 2690 487 18 87 55 0 316 2362 100 1068 1231 1068 1231 1203404 2.296 -100
101382 1 2 7 rno-miR-325 7730 10020 130 4691 4752 685 14 2721 2721 2750 337 12 100 99 0 120 869 100 1970 2031 1970 2031 570218 5.941 -100
101118 1 2 8 mmu-mir-145 7610 10480 150 2304 2262 271 11 2477 2477 2497 373 14 0 0 0 156 1272 100 -173 -215 -173 -215 352841 -0.63 -50
100403 1 3 1 hsa-mir-197 8010 7680 150 2882 3155 1147 36 2878 2878 2931 349 11 14 7 0 156 1272 100 4 277 4 277 492247 0.642 -50
100043 1 3 2 ath-miR161 8010 8080 150 1864 2017 532 26 2478 2478 2428 428 17 6 1 0 156 1272 100 -614 -461 -614 -461 314617 -0.96 100
101309 1 3 3 mmu-mir-30e 8010 8480 150 1994 2011 240 11 2383 2383 2348 232 9 1 0 0 156 1272 100 -389 -372 -389 -372 313764 -1.453 100
101045 1 3 4 mmu-mir-132 8010 8880 150 2199 2207 176 7 2336 2336 2348 139 5 5 0 0 156 1272 100 -137 -129 -137 -129 344295 -1.014 -50

Total number of rows: 1536

Table truncated, full table size 200 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap