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Sample GSM31788 Query DataSets for GSM31788
Status Public on Nov 01, 2004
Title Fig5 MM rep1
Sample type RNA
 
Source name malignant meningioma
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 5, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 6650 8380 150 2928 2875 336 2959 2825 448 0 0 0 156 1272 -31 -84 -31 -84 -50
101285 1 1 2 mmu-mir-23b 6650 8780 150 2608 2581 299 2876 2833 597 0 0 0 156 1272 -268 -295 -268 -295 -50
101021 1 1 3 mmu-mir-125b 6660 9180 150 5691 5633 451 2830 2898 509 100 98 0 156 1272 2861 2803 2861 2803 0
100751 1 1 4 miR-106a 6650 9580 150 3025 3006 231 2806 2750 272 38 3 0 156 1272 219 200 219 200 -50
100475 1 1 5 hsa-mir-211 6650 9980 150 2388 2387 162 2776 2737 222 0 0 0 156 1272 -388 -389 -388 -389 -50
100115 1 1 6 ath-miR319 6650 10380 150 3421 3364 434 2753 2744 155 83 77 0 156 1272 668 611 668 611 100
101381 1 1 7 rno-miR-325 6650 10780 150 2438 2439 173 2713 2695 199 0 0 0 156 1272 -275 -274 -275 -274 -50
101117 1 1 8 mmu-mir-145 6650 11180 150 2364 2372 143 2419 2430 269 0 0 0 156 1272 -55 -47 -55 -47 -50
100020 1 2 1 ath-miR158 7050 8380 150 3024 2967 365 3135 3136 166 8 1 0 156 1272 -111 -168 -111 -168 -50
101286 1 2 2 mmu-mir-23b 7050 8780 150 2699 2710 299 2975 2958 197 7 0 0 156 1272 -276 -265 -276 -265 -50
101022 1 2 3 mmu-mir-125b 7060 9190 150 5478 5377 572 2837 2931 595 99 95 0 156 1272 2641 2540 2641 2540 0
100752 1 2 4 miR-106a 7050 9580 150 2889 2845 268 2741 2716 237 26 3 0 156 1272 148 104 148 104 -50
100476 1 2 5 hsa-mir-211 7050 9980 150 2261 2272 179 2734 2705 214 0 0 0 156 1272 -473 -462 -473 -462 -50
100116 1 2 6 ath-miR319 7000 10390 110 3618 3598 461 2749 2781 217 90 81 0 80 656 869 849 869 849 0
101382 1 2 7 rno-miR-325 7050 10780 150 2314 2340 260 2673 2654 206 2 0 0 156 1259 -359 -333 -359 -333 -50
101118 1 2 8 mmu-mir-145 7050 11180 150 2176 2049 496 2170 2107 330 3 0 0 156 1272 6 -121 6 -121 -50
100403 1 3 1 hsa-mir-197 7450 8380 150 2353 2427 357 3003 2975 283 3 0 0 156 1272 -650 -576 -650 -576 -50
100043 1 3 2 ath-miR161 7450 8780 150 2672 2652 229 2936 2934 155 0 0 0 156 1272 -264 -284 -264 -284 -50
101309 1 3 3 mmu-mir-30e 7450 9180 150 2774 2729 294 2893 2964 504 0 0 0 156 1272 -119 -164 -119 -164 -50
101045 1 3 4 mmu-mir-132 7450 9580 150 2405 2406 177 2763 2763 222 0 0 0 156 1272 -358 -357 -358 -357 -50

Total number of rows: 1536

Table truncated, full table size 156 Kbytes.




Supplementary data files not provided
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