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Sample GSM31789 Query DataSets for GSM31789
Status Public on Nov 01, 2004
Title Fig5 MM rep2
Sample type RNA
 
Source name malignant meningioma
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 5, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 6680 8170 150 2315 2326 296 2449 2432 245 10 1 0 156 1272 -134 -123 -134 -123 -50
101285 1 1 2 mmu-mir-23b 6680 8570 150 1650 1685 445 2410 2393 929 0 0 0 156 1272 -760 -725 -760 -725 -50
101021 1 1 3 mmu-mir-125b 6690 8980 150 3952 3942 383 2566 2564 284 99 98 0 156 1272 1386 1376 1386 1376 0
100751 1 1 4 miR-106a 6680 9370 150 2499 2483 197 2500 2488 234 5 0 0 156 1272 -1 -17 -1 -17 -50
100475 1 1 5 hsa-mir-211 6680 9770 150 2038 2046 133 2444 2422 259 0 0 0 156 1272 -406 -398 -406 -398 -50
100115 1 1 6 ath-miR319 6680 10170 150 3161 3141 525 2594 2668 378 66 37 0 156 1272 567 547 567 547 -50
101381 1 1 7 rno-miR-325 6760 10580 200 3418 3439 860 2495 2734 688 55 35 0 316 2382 923 944 923 944 -100
101117 1 1 8 mmu-mir-145 6680 10970 150 2275 2170 416 2242 2200 315 8 0 0 156 1272 33 -72 33 -72 -50
100020 1 2 1 ath-miR158 7080 8170 150 2342 2365 358 2441 2465 283 11 7 0 156 1272 -99 -76 -99 -76 -50
101286 1 2 2 mmu-mir-23b 7080 8570 150 2034 2023 271 2485 2469 359 0 0 0 156 1272 -451 -462 -451 -462 -50
101022 1 2 3 mmu-mir-125b 7100 8970 160 3817 3844 395 2523 2548 294 99 97 0 208 1512 1294 1321 1294 1321 0
100752 1 2 4 miR-106a 7080 9370 150 2451 2439 260 2458 2478 205 16 2 0 156 1272 -7 -19 -7 -19 -50
100476 1 2 5 hsa-mir-211 7080 9770 150 1894 1900 127 2287 2280 224 0 0 0 156 1272 -393 -387 -393 -387 -50
100116 1 2 6 ath-miR319 7080 10170 150 2965 2967 362 2391 2619 571 50 5 0 156 1272 574 576 574 576 -100
101382 1 2 7 rno-miR-325 7110 10470 100 4270 4201 317 2609 2867 680 98 78 0 80 560 1661 1592 1661 1592 -100
101118 1 2 8 mmu-mir-145 7080 10970 150 2135 1999 610 1934 1994 273 42 21 0 156 1272 201 65 201 65 -50
100403 1 3 1 hsa-mir-197 7480 8170 150 1959 2002 281 2744 2738 212 1 0 0 156 1272 -785 -742 -785 -742 -50
100043 1 3 2 ath-miR161 7480 8570 150 2277 2273 199 2567 2569 219 0 0 0 156 1272 -290 -294 -290 -294 -50
101309 1 3 3 mmu-mir-30e 7480 8970 150 2360 2332 190 2377 2418 313 0 0 0 156 1272 -17 -45 -17 -45 -50
101045 1 3 4 mmu-mir-132 7480 9370 150 1936 1928 210 2322 2318 173 0 0 0 156 1272 -386 -394 -386 -394 -50

Total number of rows: 1536

Table truncated, full table size 156 Kbytes.




Supplementary data files not provided
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