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Sample GSM31794 Query DataSets for GSM31794
Status Public on Nov 01, 2004
Title Fig7 hsa-mir23b rep2
Sample type RNA
 
Source name synthetic
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 7, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 7310 7640 110 685 689 63 569 570 43 87 66 0 80 656 116 120 116 120 0
101285 1 1 2 mmu-mir-23b 7290 8030 120 6323 6231 722 601 613 280 100 100 0 120 820 5722 5630 5722 5630 0
101021 1 1 3 mmu-mir-125b 7290 8430 150 652 656 52 617 619 48 44 14 0 156 1272 35 39 35 39 -50
100751 1 1 4 miR-106a 7290 8830 130 871 891 105 644 645 46 100 99 0 120 940 227 247 227 247 0
100475 1 1 5 hsa-mir-211 7300 9240 130 789 787 58 619 624 64 95 77 0 120 940 170 168 170 168 0
100115 1 1 6 ath-miR319 7290 9630 130 1483 1487 175 610 613 68 100 100 0 120 940 873 877 873 877 0
101381 1 1 7 rno-miR-325 7290 10020 120 915 909 62 639 645 51 100 99 0 120 820 276 270 276 270 0
101117 1 1 8 mmu-mir-145 7280 10440 110 823 824 47 644 647 50 100 97 0 80 656 179 180 179 180 0
100020 1 2 1 ath-miR158 7680 7640 130 682 687 75 569 570 44 85 62 0 120 940 113 118 113 118 0
101286 1 2 2 mmu-mir-23b 7690 8030 130 6306 6221 885 626 627 44 100 100 0 120 940 5680 5595 5680 5595 0
101022 1 2 3 mmu-mir-125b 7690 8430 150 715 715 69 624 626 49 76 43 0 156 1272 91 91 91 91 -50
100752 1 2 4 miR-106a 7700 8840 140 906 905 106 669 672 51 95 89 0 156 1140 237 236 237 236 0
100476 1 2 5 hsa-mir-211 7720 9250 130 746 759 95 623 628 56 77 55 0 120 940 123 136 123 136 0
100116 1 2 6 ath-miR319 7700 9640 140 1425 1429 187 593 596 43 100 100 0 156 1140 832 836 832 836 0
101382 1 2 7 rno-miR-325 7680 10020 130 853 860 67 629 631 46 100 100 0 120 940 224 231 224 231 0
101118 1 2 8 mmu-mir-145 7680 10440 160 879 867 81 627 628 45 96 95 0 208 1512 252 240 252 240 0
100403 1 3 1 hsa-mir-197 8090 7640 150 558 565 64 573 577 48 14 4 0 156 1272 -15 -8 -15 -8 -50
100043 1 3 2 ath-miR161 8120 8060 130 838 832 68 610 614 42 99 97 0 120 940 228 222 228 222 0
101309 1 3 3 mmu-mir-30e 8090 8440 120 883 882 69 595 600 64 100 98 0 120 820 288 287 288 287 0
101045 1 3 4 mmu-mir-132 8070 8870 110 775 780 60 649 656 59 87 56 0 80 656 126 131 126 131 0

Total number of rows: 1536

Table truncated, full table size 146 Kbytes.




Supplementary data files not provided
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