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Status |
Public on Nov 01, 2004 |
Title |
Fig7 hsa-mir27a rep1 |
Sample type |
RNA |
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Source name |
synthetic
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Organism |
Homo sapiens |
Extracted molecule |
total RNA |
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Description |
Figure 7, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004 Keywords = microRNA
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Submission date |
Oct 04, 2004 |
Last update date |
May 27, 2005 |
Contact name |
Don Baldwin |
E-mail(s) |
dbaldwin@mail.med.upenn.edu
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Phone |
215-898-3675
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Fax |
215-898-4227
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URL |
http://www.med.upenn.edu/microarr
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Organization name |
University of Pennsylvania
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Department |
Pathology and Lab Medicine
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Lab |
Penn Microarray Facility
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Street address |
277 John Morgan, 3620 Hamilton Walk
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City |
Philadelphia |
State/province |
PA |
ZIP/Postal code |
19104 |
Country |
USA |
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Platform ID |
GPL1464 |
Series (1) |
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Data table header descriptions |
ID_REF |
|
Block |
subarray (print pin) |
Column |
subarray column |
Row |
subarray row |
Name |
oligo probe name |
X |
scan X coordinate |
Y |
scan Y coordinate |
Dia. |
spot diameter |
F532 Median |
foreground pixels median, detection at wavelength 532nm |
F532 Mean |
foreground pixels mean |
F532 SD |
foreground pixels standard deviation |
B532 Median |
background pixels median |
B532 Mean |
background pixels mean |
B532 SD |
background pixels standard deviation |
% > B532+1SD |
percentage foreground pixels greater than background plus one standard deviation |
% > B532+2SD |
percentage foreground pixels greater than background plus two standard deviations |
F532 % Sat. |
percentage foreground pixels at detector saturation |
F Pixels |
number of foreground pixels |
B Pixels |
number of background pixels |
Sum of Medians |
sum of medians |
Sum of Means |
sum of means |
VALUE |
background corrected median signal |
F532 Mean - B532 |
background corrected mean signal |
Flags |
GenePix Pro flag values |
Data table |
ID_REF |
Block |
Column |
Row |
Name |
X |
Y |
Dia. |
F532 Median |
F532 Mean |
F532 SD |
B532 Median |
B532 Mean |
B532 SD |
% > B532+1SD |
% > B532+2SD |
F532 % Sat. |
F Pixels |
B Pixels |
Sum of Medians |
Sum of Means |
VALUE |
F532 Mean - B532 |
Flags |
100019 |
1 |
1 |
1 |
ath-miR158 |
7210 |
7610 |
150 |
696 |
689 |
78 |
589 |
612 |
148 |
29 |
0 |
0 |
156 |
1272 |
107 |
100 |
107 |
100 |
-50 |
101285 |
1 |
1 |
2 |
mmu-mir-23b |
7210 |
8010 |
150 |
643 |
640 |
59 |
571 |
575 |
47 |
64 |
31 |
0 |
156 |
1272 |
72 |
69 |
72 |
69 |
-50 |
101021 |
1 |
1 |
3 |
mmu-mir-125b |
7200 |
8420 |
120 |
695 |
694 |
67 |
554 |
556 |
41 |
94 |
78 |
0 |
120 |
820 |
141 |
140 |
141 |
140 |
0 |
100751 |
1 |
1 |
4 |
miR-106a |
7210 |
8810 |
120 |
798 |
798 |
49 |
562 |
568 |
58 |
99 |
97 |
0 |
120 |
820 |
236 |
236 |
236 |
236 |
0 |
100475 |
1 |
1 |
5 |
hsa-mir-211 |
7200 |
9190 |
110 |
708 |
707 |
74 |
552 |
554 |
64 |
96 |
62 |
0 |
80 |
656 |
156 |
155 |
156 |
155 |
0 |
100115 |
1 |
1 |
6 |
ath-miR319 |
7210 |
9610 |
120 |
1147 |
1133 |
133 |
540 |
541 |
51 |
100 |
100 |
0 |
120 |
820 |
607 |
593 |
607 |
593 |
0 |
101381 |
1 |
1 |
7 |
rno-miR-325 |
7230 |
10030 |
130 |
717 |
720 |
46 |
524 |
526 |
41 |
100 |
100 |
0 |
120 |
940 |
193 |
196 |
193 |
196 |
0 |
101117 |
1 |
1 |
8 |
mmu-mir-145 |
7200 |
10400 |
110 |
676 |
674 |
47 |
545 |
548 |
42 |
96 |
83 |
0 |
80 |
656 |
131 |
129 |
131 |
129 |
0 |
100020 |
1 |
2 |
1 |
ath-miR158 |
7620 |
7590 |
100 |
741 |
745 |
89 |
597 |
627 |
198 |
21 |
1 |
0 |
80 |
560 |
144 |
148 |
144 |
148 |
0 |
101286 |
1 |
2 |
2 |
mmu-mir-23b |
7620 |
8010 |
120 |
671 |
666 |
57 |
590 |
591 |
42 |
72 |
40 |
0 |
120 |
820 |
81 |
76 |
81 |
76 |
0 |
101022 |
1 |
2 |
3 |
mmu-mir-125b |
7600 |
8410 |
110 |
677 |
674 |
57 |
550 |
553 |
52 |
92 |
61 |
0 |
80 |
656 |
127 |
124 |
127 |
124 |
0 |
100752 |
1 |
2 |
4 |
miR-106a |
7600 |
8800 |
120 |
752 |
751 |
69 |
553 |
557 |
52 |
99 |
94 |
0 |
120 |
820 |
199 |
198 |
199 |
198 |
0 |
100476 |
1 |
2 |
5 |
hsa-mir-211 |
7570 |
9220 |
110 |
665 |
672 |
80 |
568 |
574 |
48 |
76 |
50 |
0 |
80 |
656 |
97 |
104 |
97 |
104 |
0 |
100116 |
1 |
2 |
6 |
ath-miR319 |
7620 |
9620 |
140 |
1064 |
1087 |
170 |
530 |
545 |
123 |
96 |
94 |
0 |
156 |
1136 |
534 |
557 |
534 |
557 |
0 |
101382 |
1 |
2 |
7 |
rno-miR-325 |
7630 |
10000 |
100 |
650 |
648 |
49 |
550 |
555 |
46 |
88 |
56 |
0 |
80 |
560 |
100 |
98 |
100 |
98 |
0 |
101118 |
1 |
2 |
8 |
mmu-mir-145 |
7600 |
10400 |
130 |
714 |
716 |
60 |
562 |
565 |
44 |
98 |
85 |
0 |
120 |
940 |
152 |
154 |
152 |
154 |
0 |
100403 |
1 |
3 |
1 |
hsa-mir-197 |
8000 |
7600 |
150 |
532 |
543 |
54 |
548 |
553 |
55 |
9 |
2 |
0 |
156 |
1272 |
-16 |
-5 |
-16 |
-5 |
-50 |
100043 |
1 |
3 |
2 |
ath-miR161 |
8030 |
8030 |
130 |
722 |
724 |
68 |
549 |
553 |
52 |
97 |
85 |
0 |
120 |
940 |
173 |
175 |
173 |
175 |
0 |
101309 |
1 |
3 |
3 |
mmu-mir-30e |
8020 |
8420 |
130 |
740 |
739 |
60 |
549 |
555 |
59 |
99 |
88 |
0 |
120 |
940 |
191 |
190 |
191 |
190 |
0 |
101045 |
1 |
3 |
4 |
mmu-mir-132 |
8020 |
8810 |
140 |
721 |
735 |
151 |
542 |
549 |
62 |
95 |
81 |
0 |
156 |
1140 |
179 |
193 |
179 |
193 |
0 |
Total number of rows: 1536
Table truncated, full table size 146 Kbytes.
Supplementary data files not provided |
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