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Sample GSM31795 Query DataSets for GSM31795
Status Public on Nov 01, 2004
Title Fig7 hsa-mir27a rep1
Sample type RNA
 
Source name synthetic
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 7, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 7210 7610 150 696 689 78 589 612 148 29 0 0 156 1272 107 100 107 100 -50
101285 1 1 2 mmu-mir-23b 7210 8010 150 643 640 59 571 575 47 64 31 0 156 1272 72 69 72 69 -50
101021 1 1 3 mmu-mir-125b 7200 8420 120 695 694 67 554 556 41 94 78 0 120 820 141 140 141 140 0
100751 1 1 4 miR-106a 7210 8810 120 798 798 49 562 568 58 99 97 0 120 820 236 236 236 236 0
100475 1 1 5 hsa-mir-211 7200 9190 110 708 707 74 552 554 64 96 62 0 80 656 156 155 156 155 0
100115 1 1 6 ath-miR319 7210 9610 120 1147 1133 133 540 541 51 100 100 0 120 820 607 593 607 593 0
101381 1 1 7 rno-miR-325 7230 10030 130 717 720 46 524 526 41 100 100 0 120 940 193 196 193 196 0
101117 1 1 8 mmu-mir-145 7200 10400 110 676 674 47 545 548 42 96 83 0 80 656 131 129 131 129 0
100020 1 2 1 ath-miR158 7620 7590 100 741 745 89 597 627 198 21 1 0 80 560 144 148 144 148 0
101286 1 2 2 mmu-mir-23b 7620 8010 120 671 666 57 590 591 42 72 40 0 120 820 81 76 81 76 0
101022 1 2 3 mmu-mir-125b 7600 8410 110 677 674 57 550 553 52 92 61 0 80 656 127 124 127 124 0
100752 1 2 4 miR-106a 7600 8800 120 752 751 69 553 557 52 99 94 0 120 820 199 198 199 198 0
100476 1 2 5 hsa-mir-211 7570 9220 110 665 672 80 568 574 48 76 50 0 80 656 97 104 97 104 0
100116 1 2 6 ath-miR319 7620 9620 140 1064 1087 170 530 545 123 96 94 0 156 1136 534 557 534 557 0
101382 1 2 7 rno-miR-325 7630 10000 100 650 648 49 550 555 46 88 56 0 80 560 100 98 100 98 0
101118 1 2 8 mmu-mir-145 7600 10400 130 714 716 60 562 565 44 98 85 0 120 940 152 154 152 154 0
100403 1 3 1 hsa-mir-197 8000 7600 150 532 543 54 548 553 55 9 2 0 156 1272 -16 -5 -16 -5 -50
100043 1 3 2 ath-miR161 8030 8030 130 722 724 68 549 553 52 97 85 0 120 940 173 175 173 175 0
101309 1 3 3 mmu-mir-30e 8020 8420 130 740 739 60 549 555 59 99 88 0 120 940 191 190 191 190 0
101045 1 3 4 mmu-mir-132 8020 8810 140 721 735 151 542 549 62 95 81 0 156 1140 179 193 179 193 0

Total number of rows: 1536

Table truncated, full table size 146 Kbytes.




Supplementary data files not provided

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