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Sample GSM31798 Query DataSets for GSM31798
Status Public on Nov 01, 2004
Title Fig7 hsa-mir27b rep2
Sample type RNA
 
Source name synthetic
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 7, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 7180 8000 150 682 681 68 479 484 58 98 91 0 156 1272 203 202 203 202 0
101285 1 1 2 mmu-mir-23b 7180 8390 150 618 608 78 475 472 48 78 67 0 156 1272 143 133 143 133 -50
101021 1 1 3 mmu-mir-125b 7180 8820 110 641 636 75 526 533 54 77 55 0 80 656 115 110 115 110 0
100751 1 1 4 miR-106a 7170 9170 120 797 796 75 505 508 39 99 98 0 120 820 292 291 292 291 0
100475 1 1 5 hsa-mir-211 7170 9570 130 684 685 76 528 535 59 93 75 0 120 940 156 157 156 157 0
100115 1 1 6 ath-miR319 7170 9970 130 1138 1112 140 540 545 56 99 99 0 120 940 598 572 598 572 0
101381 1 1 7 rno-miR-325 7170 10380 140 745 752 101 578 582 53 91 80 0 156 1140 167 174 167 174 0
101117 1 1 8 mmu-mir-145 7170 10790 130 837 830 73 581 585 55 97 94 0 120 940 256 249 256 249 0
100020 1 2 1 ath-miR158 7580 8000 120 699 684 107 483 485 50 92 83 0 120 820 216 201 216 201 0
101286 1 2 2 mmu-mir-23b 7590 8390 120 689 688 56 509 510 34 99 98 0 120 820 180 179 180 179 0
101022 1 2 3 mmu-mir-125b 7570 8780 140 715 704 81 528 532 45 94 88 0 156 1140 187 176 187 176 0
100752 1 2 4 miR-106a 7570 9190 140 801 792 84 508 509 37 98 98 0 156 1140 293 284 293 284 0
100476 1 2 5 hsa-mir-211 7580 9570 140 734 733 66 519 521 37 99 98 0 156 1140 215 214 215 214 0
100116 1 2 6 ath-miR319 7570 9990 140 1082 1084 141 519 519 36 100 100 0 156 1140 563 565 563 565 0
101382 1 2 7 rno-miR-325 7570 10380 150 761 765 78 554 554 40 99 96 0 156 1272 207 211 207 211 0
101118 1 2 8 mmu-mir-145 7570 10790 160 848 828 115 556 557 44 96 95 0 208 1512 292 272 292 272 0
100403 1 3 1 hsa-mir-197 7980 7990 150 432 441 65 487 488 41 9 4 0 156 1272 -55 -46 -55 -46 -50
100043 1 3 2 ath-miR161 8000 8410 130 687 683 74 498 500 38 98 93 0 120 940 189 185 189 185 0
101309 1 3 3 mmu-mir-30e 7970 8770 130 781 782 93 534 538 40 99 97 0 120 940 247 248 247 248 0
101045 1 3 4 mmu-mir-132 8000 9210 140 733 742 89 506 510 40 98 95 0 156 1140 227 236 227 236 0

Total number of rows: 1536

Table truncated, full table size 146 Kbytes.




Supplementary data files not provided
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