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Sample GSM31799 Query DataSets for GSM31799
Status Public on Nov 01, 2004
Title Fig7 hsa-mir200b rep1
Sample type RNA
 
Source name synthetic
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 7, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 7200 7920 110 844 850 74 637 642 67 97 87 0 80 656 207 213 207 213 0
101285 1 1 2 mmu-mir-23b 7200 8330 100 732 737 62 651 655 60 63 32 0 80 560 81 86 81 86 0
101021 1 1 3 mmu-mir-125b 7200 8690 130 804 812 102 649 649 50 90 76 0 120 940 155 163 155 163 0
100751 1 1 4 miR-106a 7200 9090 140 880 871 80 651 651 51 96 90 0 156 1140 229 220 229 220 0
100475 1 1 5 hsa-mir-211 7200 9510 130 786 786 78 663 673 90 68 18 0 120 940 123 123 123 123 0
100115 1 1 6 ath-miR319 7200 9900 120 1151 1167 131 641 645 52 100 100 0 120 820 510 526 510 526 0
101381 1 1 7 rno-miR-325 7200 10310 130 873 862 103 680 683 63 90 80 0 120 940 193 182 193 182 0
101117 1 1 8 mmu-mir-145 7200 10690 130 905 892 98 660 663 65 95 90 0 120 940 245 232 245 232 0
100020 1 2 1 ath-miR158 7600 7890 150 810 814 94 614 617 54 93 87 0 156 1272 196 200 196 200 0
101286 1 2 2 mmu-mir-23b 7600 8310 130 757 765 88 621 622 53 86 65 0 120 940 136 144 136 144 0
101022 1 2 3 mmu-mir-125b 7610 8710 130 796 790 85 649 650 45 92 80 0 120 940 147 141 147 141 0
100752 1 2 4 miR-106a 7610 9100 140 863 855 86 628 630 49 98 94 0 156 1140 235 227 235 227 0
100476 1 2 5 hsa-mir-211 7610 9490 150 861 856 85 629 633 50 98 95 0 156 1272 232 227 232 227 0
100116 1 2 6 ath-miR319 7600 9910 140 1288 1264 200 643 642 50 98 96 0 156 1140 645 621 645 621 0
101382 1 2 7 rno-miR-325 7590 10310 120 837 831 82 679 678 49 94 85 0 120 820 158 152 158 152 0
101118 1 2 8 mmu-mir-145 7600 10690 140 918 911 79 683 688 59 96 90 0 156 1140 235 228 235 228 0
100403 1 3 1 hsa-mir-197 8000 7900 150 490 495 76 608 612 49 1 0 0 156 1272 -118 -113 -118 -113 -50
100043 1 3 2 ath-miR161 7990 8300 130 799 800 67 629 629 50 98 83 0 120 940 170 171 170 171 0
101309 1 3 3 mmu-mir-30e 7990 8700 150 893 892 102 655 661 62 97 87 0 156 1272 238 237 238 237 0
101045 1 3 4 mmu-mir-132 8000 9110 130 793 795 76 620 620 51 95 87 0 120 940 173 175 173 175 0

Total number of rows: 1536

Table truncated, full table size 144 Kbytes.




Supplementary data files not provided
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