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Sample GSM319149

Query DataSets for GSM319149

Status

Public on Oct 22, 2008

Title

20347

Sample type

genomic

Source name

blood

Organism

Homo sapiens

Characteristics

Gender: Male

Extracted molecule

genomic DNA

Extraction protocol

Salt-extraction from blood, no extra purification

Label

biotin

Label protocol

Standard Affymetrix protocol

Hybridization protocol

Standard Affymetrix protocol

Scan protocol

Standard Affymetrix protocol

Description

Genotyping data from patients with deficit schizophrenia

Data processing

We identified genome-wide CNV using the Copy Number Analyzer for Affymetrix GeneChip (CNAG2.0) software, which uses a Hidden Markov Model (HMM) algorithm to calculate copy numbers.

Submission date

Sep 09, 2008

Last update date

Oct 22, 2008

Contact name

Joris Andre Veltman

E-mail(s)

j.veltman@gen.umcn.nl

Phone

+31 24 3614941

Fax

+31 24 3668752

URL

http://www.umcn.nl/Research/Departments/HumanGenetics/Pages/default.aspx

Organization name

Radboud University Nijmegen Medical Centre

Department

Human Genetics

Lab

Genomic Disorders

Street address

Geert Grooteplein 10

City

Nijmegen

ZIP/Postal code

6500HB

Country

Netherlands

Platform ID

GPL3718

Series (1)

GSE12714

Genotyping data from 54 patients with deficit schizophrenia

Data table header descriptions
ID_REF
VALUE	Genotypes: AA, AB, BB, No Call
CONFIDENCE
RAS1	Relative allele signal for the data in the first probe group
RAS2	Relative allele signal for the data in the second probe group
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL

Data table
ID_REF	VALUE	CONFIDENCE	RAS1	RAS2	P-VALUE AA	P-VALUE AB	P-VALUE BB	P-VALUE NO CALL
AFFX-5Q-123	No Call	0	0	0	0	0	0	0
AFFX-5Q-456	No Call	0	0	0	0	0	0	0
AFFX-5Q-789	No Call	0	0	0	0	0	0	0
AFFX-5Q-ABC	No Call	0	0	0	0	0	0	0
AFFX-barcodeA	No Call	0	0	0	0	0	0	0
AFFX-barcodeB	No Call	0	0	0	0	0	0	0
AFFX-barcodeC	No Call	0	0	0	0	0	0	0
AFFX-barcodeD	No Call	0	0	0	0	0	0	0
AFFX-barcodeE	No Call	0	0	0	0	0	0	0
AFFX-barcodeF	No Call	0	0	0	0	0	0	0
AFFX-barcodeG	No Call	0	0	0	0	0	0	0
AFFX-barcodeH	No Call	0	0	0	0	0	0	0
AFFX-barcodeI	No Call	0	0	0	0	0	0	0
AFFX-barcodeJ	No Call	0	0	0	0	0	0	0
AFFX-barcodeK	No Call	0	0	0	0	0	0	0
AFFX-barcodeL	No Call	0	0	0	0	0	0	0
AFFX-barcodeM	No Call	0	0	0	0	0	0	0
AFFX-barcodeN	No Call	0	0	0	0	0	0	0
AFFX-barcodeO	No Call	0	0	0	0	0	0	0
AFFX-barcodeP	No Call	0	0	0	0	0	0	0

Total number of rows: 262338

Table truncated, full table size 19823 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM319149.CEL.gz	28.2 Mb	(ftp)(http)	CEL
GSM319149.CHP.gz	697.8 Kb	(ftp)(http)	CHP
Processed data included within Sample table
Processed data provided as supplementary file