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GEO accession:
Sample GSM319520
Query DataSets for GSM319520
Status
Public on Mar 29, 2009
Title
P09_1170P1H
Sample type
RNA
Source name
Liver
Organism
Homo sapiens
Characteristics
Anatomical sites: Liver
gender: F
age: 60-69
TNM: G4
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Hepatocellular Carcinoma
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.776619315
AFFX-BioB-5_at
0.776020286
AFFX-BioB-M_at
0.915400821
AFFX-BioC-3_at
1.254624621
AFFX-BioC-5_at
1.118603798
AFFX-BioDn-3_at
1.667108823
AFFX-BioDn-5_at
1.517086308
AFFX-CreX-3_at
2.211403198
AFFX-CreX-5_at
2.201554755
AFFX-DapX-3_at
0.751171965
AFFX-DapX-5_at
0.519791189
AFFX-DapX-M_at
0.679107894
AFFX-HSAC07/X00351_3_at
1.957361028
AFFX-HSAC07/X00351_5_at
1.528672042
AFFX-HSAC07/X00351_M_at
1.708034989
AFFX-HUMGAPDH/M33197_3_at
2.054352322
AFFX-HUMGAPDH/M33197_5_at
1.94485674
AFFX-HUMGAPDH/M33197_M_at
2.009414579
AFFX-HUMISGF3A/M97935_3_at
1.002519429
AFFX-HUMISGF3A/M97935_5_at
0.496550853
Total number of rows:
22300
Table truncated, full table size
486 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319520.CEL.gz
2.0 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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