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GEO accession:
Sample GSM319528
Query DataSets for GSM319528
Status
Public on Mar 29, 2009
Title
P09_1626P1H
Sample type
RNA
Source name
Bladder
Organism
Homo sapiens
Characteristics
Anatomical sites: Bladder
gender: M
age: 60-69
TNM: G4
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Transitional cell carcinoma of urinary bladder
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.806204762
AFFX-BioB-5_at
0.842295293
AFFX-BioB-M_at
0.94316129
AFFX-BioC-3_at
1.309299456
AFFX-BioC-5_at
1.220502221
AFFX-BioDn-3_at
1.715433128
AFFX-BioDn-5_at
1.566711659
AFFX-CreX-3_at
2.195618535
AFFX-CreX-5_at
2.190383558
AFFX-DapX-3_at
0.783413057
AFFX-DapX-5_at
0.509449446
AFFX-DapX-M_at
0.704233286
AFFX-HSAC07/X00351_3_at
2.079442472
AFFX-HSAC07/X00351_5_at
1.921181277
AFFX-HSAC07/X00351_M_at
2.018348153
AFFX-HUMGAPDH/M33197_3_at
2.0561201
AFFX-HUMGAPDH/M33197_5_at
2.046896313
AFFX-HUMGAPDH/M33197_M_at
2.076849536
AFFX-HUMISGF3A/M97935_3_at
0.996248398
AFFX-HUMISGF3A/M97935_5_at
0.487984279
Total number of rows:
22300
Table truncated, full table size
485 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319528.CEL.gz
2.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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