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GEO accession:
Sample GSM319535
Query DataSets for GSM319535
Status
Public on Mar 29, 2009
Title
P09_9685P1H
Sample type
RNA
Source name
Liver
Organism
Homo sapiens
Characteristics
Anatomical sites: Liver
gender: F
age: 10-19
TNM: G4
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Hepatocellular Carcinoma
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.948756889
AFFX-BioB-5_at
0.963354278
AFFX-BioB-M_at
1.103374394
AFFX-BioC-3_at
1.436777496
AFFX-BioC-5_at
1.315166207
AFFX-BioDn-3_at
1.826791721
AFFX-BioDn-5_at
1.661423942
AFFX-CreX-3_at
2.297736166
AFFX-CreX-5_at
2.272872034
AFFX-DapX-3_at
0.926844911
AFFX-DapX-5_at
0.734571716
AFFX-DapX-M_at
0.923786729
AFFX-HSAC07/X00351_3_at
1.872710932
AFFX-HSAC07/X00351_5_at
1.548200265
AFFX-HSAC07/X00351_M_at
1.626858227
AFFX-HUMGAPDH/M33197_3_at
1.889125822
AFFX-HUMGAPDH/M33197_5_at
1.85920601
AFFX-HUMGAPDH/M33197_M_at
1.954097356
AFFX-HUMISGF3A/M97935_3_at
1.013709955
AFFX-HUMISGF3A/M97935_5_at
0.561973023
Total number of rows:
22300
Table truncated, full table size
486 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319535.CEL.gz
2.0 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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