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GEO accession:
Sample GSM319557
Query DataSets for GSM319557
Status
Public on Mar 29, 2009
Title
J06_0293P2A
Sample type
RNA
Source name
Gastric
Organism
Homo sapiens
Characteristics
Anatomical sites: Liver
gender: M
age: 70-79
TNM: -
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Moderately to poorly differentiated metastatic gastric carcinoma with focal neuroendocrine differentiation
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.982414101
AFFX-BioB-5_at
1.023125519
AFFX-BioB-M_at
1.091347747
AFFX-BioC-3_at
1.434276947
AFFX-BioC-5_at
1.346809898
AFFX-BioDn-3_at
1.81092794
AFFX-BioDn-5_at
1.63708941
AFFX-CreX-3_at
2.196272068
AFFX-CreX-5_at
2.163916623
AFFX-DapX-3_at
1.411276747
AFFX-DapX-5_at
1.067847062
AFFX-DapX-M_at
1.270428267
AFFX-HSAC07/X00351_3_at
1.794350839
AFFX-HSAC07/X00351_5_at
1.040442692
AFFX-HSAC07/X00351_M_at
1.246024416
AFFX-HUMGAPDH/M33197_3_at
1.763871
AFFX-HUMGAPDH/M33197_5_at
1.333200455
AFFX-HUMGAPDH/M33197_M_at
1.524605723
AFFX-HUMISGF3A/M97935_3_at
0.837467648
AFFX-HUMISGF3A/M97935_5_at
-0.447533405
Total number of rows:
22300
Table truncated, full table size
486 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319557.CEL.gz
1.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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