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GEO accession:
Sample GSM319571
Query DataSets for GSM319571
Status
Public on Mar 29, 2009
Title
K07_1707P8H
Sample type
RNA
Source name
Gastric
Organism
Homo sapiens
Characteristics
Anatomical sites: Stomach
gender: M
age: 72
TNM: G3
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Adenocarcinoma of stomach
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.298788585
AFFX-BioB-5_at
0.307934755
AFFX-BioB-M_at
0.364618439
AFFX-BioC-3_at
0.721941774
AFFX-BioC-5_at
0.580050014
AFFX-BioDn-3_at
1.207048169
AFFX-BioDn-5_at
0.901001631
AFFX-CreX-3_at
1.646699554
AFFX-CreX-5_at
1.581936021
AFFX-DapX-3_at
-0.679318484
AFFX-DapX-5_at
-0.704061802
AFFX-DapX-M_at
-0.770351127
AFFX-HSAC07/X00351_3_at
1.918705445
AFFX-HSAC07/X00351_5_at
1.739618871
AFFX-HSAC07/X00351_M_at
1.87980746
AFFX-HUMGAPDH/M33197_3_at
1.843409965
AFFX-HUMGAPDH/M33197_5_at
1.908157564
AFFX-HUMGAPDH/M33197_M_at
1.815848934
AFFX-HUMISGF3A/M97935_3_at
1.23251258
AFFX-HUMISGF3A/M97935_5_at
0.02902007
Total number of rows:
22300
Table truncated, full table size
486 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319571.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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