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GEO accession:
Sample GSM319575
Query DataSets for GSM319575
Status
Public on Mar 29, 2009
Title
K08_1127P8H
Sample type
RNA
Source name
Thyroid
Organism
Homo sapiens
Characteristics
Anatomical sites: Lymph node
gender: F
age: 65
TNM: -
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Papillary carcinoma follicular variant of the thyroid
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.313364446
AFFX-BioB-5_at
0.327967679
AFFX-BioB-M_at
0.421505118
AFFX-BioC-3_at
0.742715472
AFFX-BioC-5_at
0.630975533
AFFX-BioDn-3_at
1.234069057
AFFX-BioDn-5_at
0.928145363
AFFX-CreX-3_at
1.699680848
AFFX-CreX-5_at
1.638511691
AFFX-DapX-3_at
-0.797929148
AFFX-DapX-5_at
-0.540884915
AFFX-DapX-M_at
-0.945177542
AFFX-HSAC07/X00351_3_at
1.944058116
AFFX-HSAC07/X00351_5_at
1.880243391
AFFX-HSAC07/X00351_M_at
1.937056501
AFFX-HUMGAPDH/M33197_3_at
1.79430506
AFFX-HUMGAPDH/M33197_5_at
1.877024111
AFFX-HUMGAPDH/M33197_M_at
1.816513273
AFFX-HUMISGF3A/M97935_3_at
1.020585363
AFFX-HUMISGF3A/M97935_5_at
0.506671376
Total number of rows:
22300
Table truncated, full table size
485 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319575.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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