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GEO accession:
Sample GSM319578
Query DataSets for GSM319578
Status
Public on Mar 29, 2009
Title
K09_1960P8H
Sample type
RNA
Source name
Germ Cell
Organism
Homo sapiens
Characteristics
Anatomical sites: Testis
gender: M
age: 30
TNM: -
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Teratoma
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.297925724
AFFX-BioB-5_at
0.329866713
AFFX-BioB-M_at
0.446254583
AFFX-BioC-3_at
0.799231197
AFFX-BioC-5_at
0.656251043
AFFX-BioDn-3_at
1.240337136
AFFX-BioDn-5_at
0.958080635
AFFX-CreX-3_at
1.770539112
AFFX-CreX-5_at
1.689984326
AFFX-DapX-3_at
-1.294404922
AFFX-DapX-5_at
-0.814684247
AFFX-DapX-M_at
-1.353561405
AFFX-HSAC07/X00351_3_at
1.993902671
AFFX-HSAC07/X00351_5_at
1.922439854
AFFX-HSAC07/X00351_M_at
1.96702644
AFFX-HUMGAPDH/M33197_3_at
1.970983904
AFFX-HUMGAPDH/M33197_5_at
2.003646996
AFFX-HUMGAPDH/M33197_M_at
1.945224305
AFFX-HUMISGF3A/M97935_3_at
1.203113997
AFFX-HUMISGF3A/M97935_5_at
0.71727293
Total number of rows:
22300
Table truncated, full table size
484 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319578.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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