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GEO accession:
Sample GSM319592
Query DataSets for GSM319592
Status
Public on Mar 29, 2009
Title
K08_8270P8H
Sample type
RNA
Source name
Gastric
Organism
Homo sapiens
Characteristics
Anatomical sites: Ovary
gender: F
age: 70
TNM: -
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Metastatic gastric adenocarcinoma poorly differentiated
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.314258453
AFFX-BioB-5_at
0.30074695
AFFX-BioB-M_at
0.399732486
AFFX-BioC-3_at
0.776149947
AFFX-BioC-5_at
0.635903358
AFFX-BioDn-3_at
1.281270627
AFFX-BioDn-5_at
0.932082003
AFFX-CreX-3_at
1.77249659
AFFX-CreX-5_at
1.685343011
AFFX-DapX-3_at
-1.47695369
AFFX-DapX-5_at
-0.623749576
AFFX-DapX-M_at
-1.273810017
AFFX-HSAC07/X00351_3_at
1.96797678
AFFX-HSAC07/X00351_5_at
1.871013145
AFFX-HSAC07/X00351_M_at
1.929339876
AFFX-HUMGAPDH/M33197_3_at
1.755538009
AFFX-HUMGAPDH/M33197_5_at
1.850951552
AFFX-HUMGAPDH/M33197_M_at
1.771575561
AFFX-HUMISGF3A/M97935_3_at
1.17096576
AFFX-HUMISGF3A/M97935_5_at
0.490381459
Total number of rows:
22300
Table truncated, full table size
485 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319592.CEL.gz
3.6 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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