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GEO accession:
Sample GSM319605
Query DataSets for GSM319605
Status
Public on Mar 29, 2009
Title
K14_0048PXT
Sample type
RNA
Source name
Pancreas
Organism
Homo sapiens
Characteristics
Anatomical sites: Pancreas
gender: F
age: 67
TNM: 4
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Invasive grade 4 (of 4) adenocarcinoma forming a 2.0 x 2.0 x 1.7 cm mass in the head of the pancreas.
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.745118425
AFFX-BioB-5_at
0.737545978
AFFX-BioB-M_at
0.901924498
AFFX-BioC-3_at
1.162300259
AFFX-BioC-5_at
1.120464316
AFFX-BioDn-3_at
1.652203566
AFFX-BioDn-5_at
1.426822354
AFFX-CreX-3_at
2.123678591
AFFX-CreX-5_at
2.073665507
AFFX-DapX-3_at
-0.237878666
AFFX-DapX-5_at
-0.428954107
AFFX-DapX-M_at
-0.387568025
AFFX-HSAC07/X00351_3_at
2.152430146
AFFX-HSAC07/X00351_5_at
1.856598859
AFFX-HSAC07/X00351_M_at
1.98073875
AFFX-HUMGAPDH/M33197_3_at
1.97746133
AFFX-HUMGAPDH/M33197_5_at
1.882844105
AFFX-HUMGAPDH/M33197_M_at
1.919845758
AFFX-HUMISGF3A/M97935_3_at
1.034563857
AFFX-HUMISGF3A/M97935_5_at
0.456528178
Total number of rows:
22300
Table truncated, full table size
484 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319605.CEL.gz
2.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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