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GEO accession:
Sample GSM319607
Query DataSets for GSM319607
Status
Public on Mar 29, 2009
Title
K14_0036PXT
Sample type
RNA
Source name
Liver
Organism
Homo sapiens
Characteristics
Anatomical sites: Liver
gender: F
age: 68
TNM: 3
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Well differentiated
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.740971117
AFFX-BioB-5_at
0.738349718
AFFX-BioB-M_at
0.888687731
AFFX-BioC-3_at
1.154824728
AFFX-BioC-5_at
1.062091068
AFFX-BioDn-3_at
1.583511914
AFFX-BioDn-5_at
1.351401629
AFFX-CreX-3_at
2.013780058
AFFX-CreX-5_at
1.925004333
AFFX-DapX-3_at
1.129864971
AFFX-DapX-5_at
0.874575435
AFFX-DapX-M_at
1.069217187
AFFX-HSAC07/X00351_3_at
1.808994109
AFFX-HSAC07/X00351_5_at
1.446798932
AFFX-HSAC07/X00351_M_at
1.615283262
AFFX-HUMGAPDH/M33197_3_at
2.163120099
AFFX-HUMGAPDH/M33197_5_at
2.140428586
AFFX-HUMGAPDH/M33197_M_at
2.117063024
AFFX-HUMISGF3A/M97935_3_at
0.894082947
AFFX-HUMISGF3A/M97935_5_at
0.103696598
Total number of rows:
22300
Table truncated, full table size
486 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319607.CEL.gz
2.2 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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