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GEO accession:
Sample GSM319608
Query DataSets for GSM319608
Status
Public on Mar 29, 2009
Title
K14_0038PXT
Sample type
RNA
Source name
Liver
Organism
Homo sapiens
Characteristics
Anatomical sites: Liver
gender: M
age: 64
TNM: 3
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy kit
Label
biotin
Label protocol
Affymetrix GeneChip 1-cycle IVT labeling and cDNA synthesis kits
Hybridization protocol
Affymetrix GeneChip standard protocol
Scan protocol
Affymetrix GeneChip standard protocol
Description
Moderately differentiated grade 2 (of 4) hepatocellular carcinoma forming a 17.0 x 14.0 x 8.5cm mass with extensive necrosis and vascular invasion.
Data processing
Pathwork standardization (Dumur et al., JMD 2008, Vol. 10, No. 1)
Submission date
Sep 10, 2008
Last update date
Mar 27, 2009
Contact name
Ljubomir Buturovic
Organization name
Pathwork Diagnostics
Department
Application Development
Street address
1196 Borregas Avenue
City
Sunnyvale
State/province
CA
ZIP/Postal code
94089
Country
USA
Platform ID
GPL7280
Series (1)
GSE12630
Gene expression profiles of poorly differentiated, undifferentiated and metastatic cancers
Data table header descriptions
ID_REF
VALUE
normalized values
Data table
ID_REF
VALUE
AFFX-BioB-3_at
0.692812048
AFFX-BioB-5_at
0.735010803
AFFX-BioB-M_at
0.833330647
AFFX-BioC-3_at
1.157757986
AFFX-BioC-5_at
1.069250208
AFFX-BioDn-3_at
1.578548362
AFFX-BioDn-5_at
1.350546421
AFFX-CreX-3_at
2.064033329
AFFX-CreX-5_at
2.003244834
AFFX-DapX-3_at
1.11331651
AFFX-DapX-5_at
0.83510428
AFFX-DapX-M_at
1.047425242
AFFX-HSAC07/X00351_3_at
2.079083172
AFFX-HSAC07/X00351_5_at
1.671259389
AFFX-HSAC07/X00351_M_at
1.813575194
AFFX-HUMGAPDH/M33197_3_at
2.181205097
AFFX-HUMGAPDH/M33197_5_at
2.125088206
AFFX-HUMGAPDH/M33197_M_at
2.142785597
AFFX-HUMISGF3A/M97935_3_at
1.34378145
AFFX-HUMISGF3A/M97935_5_at
0.821155316
Total number of rows:
22300
Table truncated, full table size
485 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM319608.CEL.gz
2.2 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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