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Sample GSM32387 Query DataSets for GSM32387
Status Public on Oct 23, 2004
Title Untreated Raw 264.7 cells 1 hour vs Interferon-gamma treated RAW 264.7 cells 1 hour . (set 1)
Sample type RNA
 
Channel 1
Source name Total RNA from Untreated RAW 264.7 cells was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from Interferon-gamma (5nM) treated RAW 264.7 cells was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 1 hour.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from Interferon-gamma (5nM) treated RAW 264.7 cells cultured for 1 hour.
 
Submission date Oct 14, 2004
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (1)
GSE1863 Dual Ligand Effects

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 75313.9 46921.9 45377 6284.17 437.883 435 13.4433 4261.1 2098.74 1490 1328.85 272.394 272 8.55205 -1.24735 0
2 75.1247 467.741 466 8.41972 428.392 428 5.90967 39.5633 283.926 283 7.38463 270.163 269 7.23156 -0.27849 0
3 12.7852 427.208 428.5 7.277 426.704 426 6.64807 17.4069 272.875 272.5 5.12719 269.296 269 6.99055 0.134016 0
4 106.694 483.72 482 6.20833 427.736 428 7.10184 73.8083 302.2 300 9.22858 271.478 271 7.10753 -0.160033 0
5 13.141 434.519 435 7.31894 432.032 432 6.83357 12.9363 273.333 273 6.85004 273.65 273 6.60018 0 0
6 129.999 501.464 501 10.2107 433.296 433 7.39892 105.995 320.857 317 9.71335 274.068 274 7.13066 -0.0886524 0
7 12.9613 435.607 434.5 9.81812 433.589 433.5 6.80129 17.2408 275.429 274 9.94961 272.014 272 6.47434 0.123908 0
8 18503.3 11990.8 11974 575.201 429 430 8.24077 8182.45 3740.28 3750 187.052 271.828 272 7.35734 -0.354367 -1.17718169320095
9 610.98 781.28 779 18.9352 427.319 426 7.79023 241.073 376.68 381 16.8788 272.202 273 6.76972 -0.403879 -1.341656997035013
10 261.523 563.286 566.5 17.9007 423.538 423 6.78079 111.452 321.929 322 14.9417 272.679 272 8.00724 -0.370423 -1.2305185706924615
11 142.387 502.56 499 16.9265 427.57 426.5 10.8787 79.4378 309.36 307 9.94099 275.69 275 7.48728 -0.253444 -0.84192274408063261
12 72077.9 42699.7 41273 7149.77 426.419 426 10.0204 38548.1 17710.2 17448 3745.37 277.985 278 8.49138 -0.271799 -0.90289673426229033
13 218.211 539.481 540 13.6166 422.87 423 8.23199 151.483 343.926 343 11.3135 275.296 275 7.55673 -0.158512 -0.52656546617678546
14 134.317 494.143 496 7.41227 423.572 424 7.65677 90.7728 314 312.5 10.1471 274.736 274 6.75095 -0.170174 -0.56530579161936201
15 39532.9 24319.7 23571 2183.25 428.534 428 8.63738 21571.6 9739.75 9104.5 1436.42 275.392 276 7.53733 -0.263076 -0.87391955549058764
16 218.967 543.296 546 13.6939 425.994 426 7.48547 164.592 346.704 349 14.6361 271.865 272 7.11571 -0.123971 -0.41182274785128131
17 339.83 623.808 626.5 18.8234 426.057 425 9.15476 503.903 494.962 497 34.8304 272.829 272.5 7.23694 0.171085 0.56833206811380432
18 20417.4 13110.8 13094 331.651 427.662 426 8.55249 10766.5 4866.44 4860 151.366 273.974 274 7.91955 -0.277925 -0.92324686577157022
19 94.6141 473.92 474 14.4537 424.372 424 9.16095 70.8121 304.56 304 16.0184 275.388 275 7.68044 -0.125849 -0.41806132881347957
20 46858.2 28341.5 28393 941.082 431.058 428 16.3362 32210.1 14619.8 14061 1834.16 278.595 276 12.1673 -0.162793 -0.54078664035099844

Total number of rows: 16281

Table truncated, full table size 2077 Kbytes.




Supplementary data files not provided
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