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Sample GSM32388 Query DataSets for GSM32388
Status Public on Oct 23, 2004
Title 2-Methyl-thio-ATP treated Raw 264.7 cells 1 hour vs untreated RAW 264.7 cells 1 hour. (set 1)
Sample type RNA
 
Channel 1
Source name Total RNA from 2-Methyl-thio-ATP (500uM) RAW 264.7 cells was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from untreated RAW 264.7 cells was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from 2-Methyl-thio-ATP (500nM) treated RAW 264.7 cells cultured for 1 hour.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.7 cells cultured for 1 hour.
 
Submission date Oct 14, 2004
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (1)
GSE1863 Dual Ligand Effects

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 43493.1 36139.7 35025 5821.58 402.594 401 10.6394 1920.87 1365.35 1260 270.328 278.594 279 8.83094 -1.35492 0
2 40.2731 416.87 418 5.13725 395.432 395 5.68207 51.5083 312.826 310 13.1483 278.729 278 10.1222 0.106862 0
3 11.5246 398.458 397.5 8.91008 395.118 395 6.572 12.2732 280.5 282 9.89071 278.467 279 10.0706 0 0
4 52.3062 423.462 423.5 8.58478 395.07 395 6.70736 66.1206 323.423 323.5 16.1299 277.49 277 9.57402 0.101784 0
5 10.2678 395.077 394 6.72858 396.061 396 5.74602 11.7006 282.769 285 10.1245 280.041 280 8.81148 0.0567309 0
6 44.875 420.2 420 7.42743 396.077 396 6.99771 53.0109 316.32 314 10.3832 281.006 280 9.67088 0.0723607 0
7 12.8408 404.214 405.5 6.62407 401.447 401 7.31142 10.7983 285.786 284 10.2861 283.967 285 8.77567 0 0
8 12925.7 11008.3 11176 838.07 403.457 403 7.40787 8831.32 5314.36 5377 445.503 285.775 286 9.30747 -0.165428 -0.54953992088102643
9 620.293 813.16 822 40.2872 407.647 408 6.81182 364.531 541.92 547 51.0669 289.438 289 10.1863 -0.230862 -0.7669069638418865
10 257.984 554.708 558.5 19.4947 411.228 411 8.30156 115.464 383.458 381.5 19.3188 294.804 296 11.4627 -0.349147 -1.1598412285456379
11 122.392 481.125 483 10.3096 413.819 414 6.91927 104.546 375.542 373.5 14.4613 296.394 295 10.5858 -0.0684436 -0.22736471775523259
12 57796.5 45173.5 44246 6724.89 419.304 418 9.60772 50187.6 30618.3 27307 7850.54 299.561 299 11.5153 -0.0613047 -0.20364980527864127
13 170.488 511.429 507 11.5003 417.506 417.5 8.45306 141.654 408.095 410 14.0922 297.526 297 12.3554 -0.0804661 -0.26730259827601593
14 131.163 488.885 489.5 11.1403 416.667 416 8.22674 101.66 375.615 372.5 14.7162 298.774 297 12.0515 -0.110662 -0.36761120683642523
15 33219.5 26779.3 25379 4536.16 418.753 418 8.97587 29940.7 17945.9 16472 3703.77 299.383 297.5 11.3611 -0.0451313 -0.14992293342879004
16 217.093 537.519 536 16.7203 416.928 418 6.33408 148.712 414.481 420 27.3684 298.461 296.5 11.3749 -0.1643 -0.54579278598999381
17 282.878 590.308 590.5 12.5308 418.253 418 6.90704 415.853 609.731 606.5 33.9701 300.813 301 12.0577 0.16734 0.5558914473984512
18 13568.7 11508 11498 344.303 421.222 421 11.3405 14377.1 8528.62 8576 485.479 304.016 302.5 14.8631 0.0251323 0.083487693459137771
19 105.714 477.125 479 10.3894 419.067 418.5 7.53931 103.325 379.375 378.5 20.7989 301.54 300 11.7831 -0.00992654 -0.032975252111023125
20 35625.2 28489.5 28521 693.568 422.033 422 8.70051 38292.9 23037.5 23038 1033.47 303.689 304 10.3016 0.0313613 0.10417998356219102

Total number of rows: 16281

Table truncated, full table size 2078 Kbytes.




Supplementary data files not provided
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