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Sample GSM32395 Query DataSets for GSM32395
Status Public on Oct 23, 2004
Title Untreated Raw 264.7 cells 30 minutes vs Lipopolysaccharide (LPS) treated RAw 264.7 cells 30 minutes. (set 1)
Sample type RNA
 
Channel 1
Source name Total RNA from untreated RAW 264.7 cells was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from LPS (100ng/100pM LPS binding protein) treated RAW 264.7 cells was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 30 minutes.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from Lipopolysaccharide (100ng/100pM LPS binding protein) treated RAW 264.7 cells cultured for 30 minutes.
 
Submission date Oct 15, 2004
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (1)
GSE1863 Dual Ligand Effects

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 62598.5 42983.5 42803 4548.99 463.682 459.5 19.012 9503.54 5235 5057 656.944 320.962 321 13.6954 -0.818678 0
2 94.9405 504.12 504 9.7182 449.115 448 8.36504 74.2769 349.44 350 11.7901 312.752 312 11.144 -0.106598 0
3 16.814 450.679 450 9.54154 447.481 447.5 9.03906 18.5556 311.643 312.5 13.4253 309.296 309 12.1404 0 0
4 126.785 520.889 521 12.3049 445.722 445 8.60223 130.907 373.593 374 23.8283 304.741 304 10.3328 0.0138945 0
5 15.725 451.893 451 11.852 445.957 445 8.58075 16.6814 307.5 307 10.5497 304.832 304 10.7525 0 0
6 157.467 542.846 543.5 15.6248 448.42 448 8.83766 166.888 398.885 398 18.4615 309.822 309 12.5583 0.0252329 0
7 15.8987 452.321 453 9.64962 449.297 449 8.52892 15.0375 306.893 306.5 8.32817 304.826 305 9.8595 0 0
8 22891.9 16120.3 16158 886.939 448.124 448 8.63082 16358.6 8700.96 8584 625.456 304.431 305 10.5467 -0.145935 -0.48478557652738724
9 647.126 876.429 871.5 26.62 446.427 446.5 8.57594 510.657 567.357 552 39.9196 305.14 306 10.8949 -0.10286 -0.34169352384011409
10 297.747 631.583 624 30.443 447.239 447 8.24085 231.471 428.583 428.5 14.431 305.325 305 10.3398 -0.10935 -0.36325283717593315
11 134.968 530 529 14.1118 449.5 450 9.53822 167.168 394.828 391 20.2539 305.411 305 10.1869 0.0929224 0.30868153120436148
12 64452.3 42553.8 41841 2698 453.026 452 11.667 61363.3 33344.9 32482 4485.44 311.204 312 11.3595 -0.0213301 -0.070857058456756924
13 233.653 590.8 588 17.3445 448.131 447 8.25012 207.328 422.28 422 19.2148 311.319 312 12.0211 -0.0519131 -0.17245158538269703
14 121.073 523.042 522 13.8108 451.42 451 8.68834 128.286 382.917 383 12.0503 315.506 315 11.5652 0.02513 0.083480053024519552
15 34527.6 23691.4 23003.5 2549.98 453.616 452 9.64425 27240.1 14543 13875 1826.35 315.066 313 12.6558 -0.102958 -0.34201907279341293
16 216.79 580.44 584 18.6259 448.845 449 7.85679 184.238 409.84 407 20.9537 311.503 310 12.2873 -0.0706604 -0.23472876795597902
17 224.928 591.5 620.5 77.9038 454.115 453 10.1746 221.953 437.964 468 73.1586 318.791 318 12.8229 -0.0057838 -0.019213367715209467
18 25799.1 17959 17889.5 492.677 452.208 452 9.29236 24189.3 12846.2 12776.5 1214.99 316.438 317 12.2399 -0.0279818 -0.092953527565519126
19 98.3015 510.348 507 12.9461 452.925 453 10.0217 105.077 362.739 361 21.8054 308.391 309 11.848 0.0289486 0.096165167647656397
20 50915.9 34084.1 34055.5 1158.65 456.843 455.5 11.251 45871.6 24741.6 24365 2237.47 320.284 320 15.9946 -0.0453094 -0.15051456882248951

Total number of rows: 16281

Table truncated, full table size 2088 Kbytes.




Supplementary data files not provided
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