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Sample GSM32397 Query DataSets for GSM32397
Status Public on Oct 23, 2004
Title Lipopolysaccharide (LPS) treated Raw 264.7 cells 2 hours vs untreated RAw 264.7 cells 2 hours. (set 1)
Sample type RNA
 
Channel 1
Source name Total RNA from LPS (100ng/100pM LPS binding protein) treated RAW 264.7 cells was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from untreated RAW 264.7 cells was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from Lipopolysaccharide (100ng/100pM LPS binding protein) treated RAW 264.7 cells cultured for 2 hours.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.7 cells cultured for 2 hours.
 
Submission date Oct 15, 2004
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (1)
GSE1863 Dual Ligand Effects

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 169543 63689 64266 1950.38 405.575 405 9.90913 5865.71 2926.14 2861 490.995 281.89 282 10.0496 -1.46096 0
2 72.3591 427.222 427 6.07221 404.044 404 7.13287 61.8322 306.111 308 7.15398 282.503 283 8.98302 -0.0682788 0
3 21.4595 406.72 406 8.68197 401.948 402 6.46935 18.4514 283.84 280 10.2049 281.196 281 9.11769 -0.0655902 0
4 97.2041 431.889 432 8.71044 399.787 400 5.76723 88.2244 316.333 319 16.6756 280.317 279 8.89389 -0.042096 0
5 33.8956 407.107 407 9.47253 398.021 398 5.50043 15.3906 283.25 280.5 7.81084 281.637 281 7.55931 -0.342887 0
6 125.629 440.5 440.5 4.61622 398.296 398 5.90862 101.356 323.591 322.5 15.0354 281.329 281.5 10.1576 -0.093239 0
7 20.8591 401.222 402 5.52152 398.81 398 6.99249 18.2469 280.963 283 11.0436 281.844 282 9.17912 0 0
8 12942 5401.25 5252 469.944 399.214 400 6.66975 16048 7275.07 7101.5 609.675 282.346 282 9.71622 0.0934212 0.31033850893809123
9 479.54 576.269 579 13.5545 397.703 398 6.32708 459.788 483.346 484 15.758 283.772 283 9.50622 -0.0182675 -0.060683321473354805
10 195.269 464.65 466 14.0348 397.435 397 6.72613 162.38 353.4 354 11.1704 282.474 282.5 9.02734 -0.0801004 -0.26608776917171567
11 102.53 432.84 433 8.96605 398.841 399 6.29045 86.7192 316.88 317 9.14385 281.573 282 10.0947 -0.072734 -0.24161711805353739
12 115482 41322.4 41018 3129.16 401.045 401 6.84692 88291.5 42293.4 41118 5733.99 284.11 284 9.82099 -0.116595 -0.38732020622339197
13 201.718 469.583 470 6.08574 400.006 400 6.77637 166.06 354.292 354.5 16.0907 281.691 281 8.68874 -0.0844797 -0.28063548887765605
14 102.773 433.208 432.5 5.85312 399.123 399 6.57359 86.043 315.083 312.5 12.8161 280.097 280 9.68784 -0.0771644 -0.25633458828512634
15 35611.6 13544.2 13212.5 1072.46 399.291 399 7.11445 45820.1 21208.5 20382 2092.85 284.968 284 11.0034 0.109465 0.36363485890684516
16 1354.63 908.115 888 77.4505 399.579 400 5.68963 157.708 348.654 350.5 16.8948 283.881 284 10.1273 -0.933967 -3.1025712169976654
17 387.548 540.741 541 13.421 397.338 397 5.34281 522.352 509.222 516 30.906 281.045 281 9.34615 0.129638 0.43064811436500799
18 30159.3 11915.6 11830.5 562.598 399.9 400 6.34758 11966.3 5559.23 5510.5 217.92 281.188 281 9.38498 -0.401462 -1.3336278968296702
19 83.7025 429.231 430 6.50727 401.962 402 6.02707 65.3446 306.846 305.5 11.1272 281.631 280.5 9.37186 -0.107529 -0.35720360611514318
20 41836.1 15872 15898 433.392 402.285 402 6.87702 36073.3 16725.7 16628 741.23 282.752 283 10.5967 -0.0643652 -0.21381656621304401

Total number of rows: 16281

Table truncated, full table size 2076 Kbytes.




Supplementary data files not provided
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