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Sample GSM32402 Query DataSets for GSM32402
Status Public on Oct 23, 2004
Title Lipopolysaccharide (LPS) and 2-Methyl-thio-ATP treated Raw 264.7 cells 2 hr vs untreated RAw 264.7 cells 2 hr. (set 1)
Sample type RNA
 
Channel 1
Source name Total RNA from LPS (100ng/100pM LPS binding protein) and 2MA (500uM) treated RAW 264.7 cells was label with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from untreated RAW 264.7 cells was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from Lipopolysaccharide(100ng/100pM LPS binding protein) and 2-Methyl-thio-ATP (500uM) treated RAW 264.7 cells cultured for 2 hours.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.7 cells cultured for 2 hours.
 
Submission date Oct 15, 2004
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (1)
GSE1863 Dual Ligand Effects

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 100231 54962.6 55351 2441.02 411.728 410 9.69419 2764.12 1497.52 1488 84.2571 277.103 276 7.78058 -1.55945 0
2 85.1544 449.778 447 13.0305 406.42 407 6.78812 65.4984 300.889 301 9.78356 275.917 275 8.49507 -0.113976 0
3 13.6461 404.75 403.5 8.0663 405.373 405 6.40198 14.3878 278.125 279 10.0491 275.85 276 7.39912 0 0
4 120.656 464.071 464 8.66209 402.423 402 6.177 88.7745 309.286 308.5 11.6932 273.385 273.5 7.85388 -0.13326 0
5 14.0561 408.375 410.5 10.0556 404.453 404.5 7.05452 23.4107 279.25 279 11.3913 272.86 272 8.4202 0.221551 0
6 152.701 481.077 479 16.8046 402.884 402 5.99454 90.6169 310.654 310.5 11.8015 273.755 273 7.74709 -0.226632 0
7 15.5182 402.8 403 6.69577 405.389 405 6.35622 14.7257 278.8 278 9.12871 277.564 278 8.67376 0 0
8 21709.1 12250 12157 689.209 402.711 403 6.6727 10514.8 4923.19 4832.5 322.804 280.197 280 9.31 -0.314839 -1.0458725194662422
9 654.027 745.286 745.5 33.1259 401.372 401 6.38937 288.777 407.036 404 18.7942 280.073 279.5 9.12259 -0.355033 -1.1793940973121448
10 246.633 528.192 523.5 22.6098 402.247 402 7.5074 128.554 332.308 328 16.4214 277.265 277 8.7091 -0.282966 -0.93999270529789736
11 121.656 468 465.5 10.2618 405.831 406 7.41518 88.4683 313 313 10.7299 277.236 278 9.69631 -0.138345 -0.45957214228719223
12 88326.7 45524.7 45018 4648.8 406.322 406 8.65188 56011.7 26730 26310 3821.99 280.893 280 9.57907 -0.197813 -0.65712056223395399
13 203.031 506.304 506 12.8786 402.841 403 6.27598 141.031 339.13 337 15.0885 278.331 278 9.29496 -0.158248 -0.52568847715973543
14 114.738 463.63 465 10.415 404.963 405 6.77946 79.8955 309.852 309 12.5964 278.106 278 8.7254 -0.157185 -0.52215726759486991
15 40520.3 21909.3 21817 1431.63 405.658 405 7.54584 24116.2 11238 10780 1010.76 279.994 280 9.00354 -0.225363 -0.74863968124810054
16 1568.62 1232.27 1218.5 53.8978 403.13 403 7.71049 132.082 331.818 331 10.6977 276.522 276 8.0631 -1.07468 -3.570009685013551
17 355.096 588.667 590 13.9201 403.097 402.5 7.62758 490.472 496.333 503 27.0612 276.87 276 8.54798 0.140269 0.46596353194175538
18 30570.9 17039.7 17064 552.109 402.349 402 8.10875 9050.74 4283.43 4268 156.87 276.355 276 8.79299 -0.528624 -1.7560509172317369
19 87.2593 447.6 449 9.04618 403.061 402 7.61955 53.1117 295.72 298 10.8264 276.426 276 8.62057 -0.215622 -0.71628077967580295
20 46037.1 24640.8 24597.5 772.87 404 404 9.16679 29996.4 14016.7 14071.5 508.456 276.067 276 9.43932 -0.186039 -0.61800818084475018

Total number of rows: 16281

Table truncated, full table size 2075 Kbytes.




Supplementary data files not provided
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