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Sample GSM32404 Query DataSets for GSM32404
Status Public on Oct 23, 2004
Title Lipopolysaccharide (LPS) treated Raw 264.7 cells 4 hours vs untreated RAw 264.7 cells 4 hours. (set 1)
Sample type RNA
 
Channel 1
Source name Total RNA from LPS (100ng/100pM LPS binding protein) treated RAW 264.7 cells was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from untreated RAW 264.7 cells was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from Lipopolysaccharide (100ng/100pM LPS binding protein) treated RAW 264.7 cells cultured for 4 hours.
All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.7 cells cultured for 4 hours.
 
Submission date Oct 15, 2004
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (1)
GSE1863 Dual Ligand Effects

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio.
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 125780 50754.3 50817 2715.46 417.269 414 14.9461 3441.08 1580.53 1461 382.82 286.201 286.5 9.10076 -1.56292 0
2 111.185 444.714 446 10.6696 404.222 404 7.14778 81.412 311.321 309.5 12.7746 284.127 283 9.94682 -0.135357 0
3 27.324 409.261 410 9.16127 402.238 403 7.07833 23.4022 280.391 282 8.44091 285.159 285 10.6139 -0.0672868 0
4 117.643 445.76 445 11.3147 402.788 403 6.59341 116.298 326.44 326 13.748 285.485 284 10.9403 -0.00499378 0
5 20.0419 404.148 404 7.89208 401.568 401 7.30239 30.1112 291.852 289 10.4686 284.297 283 10.2502 0.17679 0
6 158.452 460.292 459.5 11.9836 401.729 402 7.08878 137.134 334.333 331.5 9.59921 285.123 285 9.80481 -0.0627533 0
7 20.0206 406.704 406 5.86918 403.34 404 7.28871 24.7912 290.37 290 10.0963 285.013 285 9.85736 0.0928194 0
8 22189.8 9276.65 9227.5 451.03 402.561 403 7.37923 20960.8 8197.35 8066 513.112 284.032 284 9.93919 -0.0247445 -0.082199449743940334
9 771.244 705.923 708 14.3831 401.801 401.5 6.2573 580.966 501.5 498.5 32.1823 285.314 284.5 9.23025 -0.123041 -0.4087333547230359
10 264.413 502.704 504 14.3254 402.472 402 6.3983 203.214 358.296 357 17.7738 283.87 284 10.0126 -0.11433 -0.37979603908847215
11 137.527 454.261 457 11.1487 403.705 404 7.26013 140.515 334 332 18.6888 283.456 283 9.49074 0.00933427 0.031007773758264336
12 107992 42386.1 42477 3584.09 406.329 406 9.06034 85371.9 33467.5 33807 3864.81 287.855 287 11.063 -0.102076 -0.3390891322137225
13 224.943 488 489 10.8244 403.594 404 7.00251 170.821 347.64 349 16.2503 285.438 286 9.4421 -0.119532 -0.39707670903807613
14 137.248 453.37 454 8.18605 402.92 402 7.91387 140.004 341.593 337 16.5721 291.252 291 10.8965 0.00863337 0.028679434356557652
15 48828.8 19635.9 19385 1087.78 407.09 407 8.09968 51407.9 20010.3 19734.5 1359.98 290.955 289 11.2968 0.0223541 0.074258712825921683
16 5431.21 2570.91 2560.5 233.762 404.945 405 7.21217 217.853 364.909 358 27.6249 287.374 287 9.92446 -1.39673 -4.6398366279720253
17 484.769 595.107 592 25.5435 405.147 405 7.6749 714.442 558.821 546 52.7426 291.233 292 10.8745 0.168432 0.55951899287806828
18 29482.5 12197.9 12267.5 362.489 406.078 406 7.82332 15669.1 6203.42 6233.5 230.907 289.412 289 10.5222 -0.27452 -0.91193570060847884
19 96.4115 442.32 444 8.32526 407.49 408 7.238 84.4169 319.76 319 9.57984 291.374 292 11.9176 -0.0576995 -0.19167359011095331
20 57744.1 23143.1 22990 825.824 409.007 408 8.10624 44619 17413.3 17430 1042.37 294.25 293.5 11.6044 -0.111988 -0.37201608349024601

Total number of rows: 16281

Table truncated, full table size 2068 Kbytes.




Supplementary data files not provided
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