NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM326357 Query DataSets for GSM326357
Status Public on Aug 01, 2011
Title Genotype 5×8 grown at 20°C
Sample type SRA
 
Source name larvae
Organism Magallana gigas
Characteristics Genotype 5X8, 20°C
Growth protocol Animals were grown in seawater and fed ad-libitum
Extracted molecule total RNA
Extraction protocol Animals homogenized in RNA extraction buffer, RNA extracted with Qiagen Rneasy Kit
Digital Gene Expression: poly-A selected, DpnII digest and sequenced on Illumina Genome Analyzer according to manufacturer's instructions
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Description 5×8-20
Data processing identical tags were condensed into a set of unique tags and a count equivalent to the number of times a tag was observed was assigned to each unique tag. Counts were analyzed using a linear model.
 
Submission date Oct 02, 2008
Last update date May 15, 2019
Contact name Jason Curole
E-mail(s) jcurole@gmail.com
Organization name University of Southern California
Department Biological Sciences
Street address 3616 Trousdale Pkwy.
City Los Angeles
State/province CA
ZIP/Postal code 90089
Country USA
 
Platform ID GPL9389
Series (1)
GSE13028 Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae
Relations
SRA SRX019042
BioSample SAMN00011146

Data table header descriptions
SEQUENCE
COUNT count

Data table
SEQUENCE COUNT
ATAGGAGAAGTTACGC 55334
AAAAAAAAAAAAAAAA 33124
ACCATAGAGACTTGTT 28741
TGGCTGCCCTTGAGAA 22950
ATTTTTGATTTTGAAA 21435
TAGGTTTTCTATTTCT 20356
CCCTGCAGTGGCAGCC 19234
GTCGTAGTGGAAAAGT 19202
AACAGTCTTAACGGTT 18103
AACATTGTGTGGACGG 16417
AGAACTTCACTGTGTT 14597
AATTGATGATAGCAGC 11895
ACCCGTCTGAGGAGGG 11784
GAGAGTTACGGATTTC 11617
GCTTGTTCTATGTTGG 11251
TTTGGGAGAGGGCGTA 11166
ACAATCTTGAGCGAAT 11037
TTTTTTTGTTCCTCGA 10892
CGCCGACACTGGGGAG 10838
TTTAGCCAAGCAGGCC 10581

Total number of rows: 220706

Table truncated, full table size 4123 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap