|
| Status |
Public on Aug 01, 2011 |
| Title |
Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae |
| Organism |
Magallana gigas |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We produced differentially sensitive-temperature phenotypes using genetically defined larval families of the bivalve Crassostrea gigas. Larval growth rates varied ~5-fold and reciprocal hybrids showed different genotype-dependent responses over a 15-25°C temperature range. Whole-genome expression analysis of ~24 million cDNAs from larvae identified 22,250 unique transcripts. Of these, ~15% showed a significant interaction between genotype and temperature and are associated with genotype-dependent differences in response to temperature.
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| |
|
| Overall design |
Examination of 2 genotypes of Pacific oyster larvae, grown at 3 temperatures
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| |
|
| Contributor(s) |
Curole JP, Manahan DT |
| Citation missing |
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| |
| Submission date |
Oct 02, 2008 |
| Last update date |
May 15, 2019 |
| Contact name |
Jason Curole |
| E-mail(s) |
jcurole@gmail.com
|
| Organization name |
University of Southern California
|
| Department |
Biological Sciences
|
| Street address |
3616 Trousdale Pkwy.
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90089 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9389 |
Illumina Genome Analyzer (Crassostrea gigas) |
|
| Samples (6)
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|
| Relations |
| SRA |
SRP002286 |
| BioProject |
PRJNA109697 |
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