NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE13028 Query DataSets for GSE13028
Status Public on Aug 01, 2011
Title Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae
Organism Crassostrea gigas
Experiment type Expression profiling by high throughput sequencing
Summary We produced differentially sensitive-temperature phenotypes using genetically defined larval families of the bivalve Crassostrea gigas. Larval growth rates varied ~5-fold and reciprocal hybrids showed different genotype-dependent responses over a 15-25°C temperature range. Whole-genome expression analysis of ~24 million cDNAs from larvae identified 22,250 unique transcripts. Of these, ~15% showed a significant interaction between genotype and temperature and are associated with genotype-dependent differences in response to temperature.
 
Overall design Examination of 2 genotypes of Pacific oyster larvae, grown at 3 temperatures
 
Contributor(s) Curole JP, Manahan DT
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 02, 2008
Last update date May 15, 2019
Contact name Jason Curole
E-mail(s) jcurole@gmail.com
Organization name University of Southern California
Department Biological Sciences
Street address 3616 Trousdale Pkwy.
City Los Angeles
State/province CA
ZIP/Postal code 90089
Country USA
 
Platforms (1)
GPL9389 Illumina Genome Analyzer (Crassostrea gigas)
Samples (6)
GSM326353 Genotype 8×5 grown at 25°C
GSM326354 Genotype 8×5 grown at 20°C
GSM326355 Genotype 8×5 grown at 15°C
Relations
SRA SRP002286
BioProject PRJNA109697

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap