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Sample GSM326358 Query DataSets for GSM326358
Status Public on Aug 01, 2011
Title Genotype 5×8 grown at 15°C
Sample type SRA
 
Source name larvae
Organism Magallana gigas
Characteristics Genotype 5X8, 15°C
Growth protocol Animals were grown in seawater and fed ad-libitum
Extracted molecule total RNA
Extraction protocol Animals homogenized in RNA extraction buffer, RNA extracted with Qiagen Rneasy Kit
Digital Gene Expression: poly-A selected, DpnII digest and sequenced on Illumina Genome Analyzer according to manufacturer's instructions
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Description 5×8-15
Data processing identical tags were condensed into a set of unique tags and a count equivalent to the number of times a tag was observed was assigned to each unique tag. Counts were analyzed using a linear model.
 
Submission date Oct 02, 2008
Last update date May 15, 2019
Contact name Jason Curole
E-mail(s) jcurole@gmail.com
Organization name University of Southern California
Department Biological Sciences
Street address 3616 Trousdale Pkwy.
City Los Angeles
State/province CA
ZIP/Postal code 90089
Country USA
 
Platform ID GPL9389
Series (1)
GSE13028 Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae
Relations
SRA SRX019043
BioSample SAMN00011147

Data table header descriptions
SEQUENCE
COUNT count

Data table
SEQUENCE COUNT
AAAAAAAAAAAAAAAA 52018
TGGCTGCCCTTGAGAA 47024
ATAGGAGAAGTTACGC 32438
ATTTTTGATTTTGAAA 28448
ACCATAGAGACTTGTT 21721
CCCTGCAGTGGCAGCC 21714
TCTCGCCAAGTTCTTC 21062
CATCGCCTCCATAGAC 20623
GTCGTAGTGGAAAAGT 18791
TTTTTTTGTTCCTCGA 18717
AACAAAAAATAAAGAG 17834
CACATTTTACGACGTG 16394
CGCCGACACTGGGGAG 15060
ACCCGTCTGAGGAGGG 14887
TCCCCGACTCCGTTGA 14747
CGACGCGACTACCTGC 14269
AAAGTCTGTTTCTATG 14110
AGTGCTGGAGAGCCCA 13572
CTTTTTTGTTCCTCGA 13259
TAGGTTTTCTATTTCT 13024

Total number of rows: 345435

Table truncated, full table size 6446 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

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