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Status |
Public on Sep 22, 2009 |
Title |
LC from biological replicate C57BL/6_2 |
Sample type |
RNA |
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Source name |
purified Langerhans cells from ear epidermis, isolated after 16 hours of ex vivo cultivation
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Organism |
Mus musculus |
Characteristics |
C57BL/6 mice, 6-8 week old female mice
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Treatment protocol |
no treatment of mice
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Growth protocol |
epidermal sheets, cultivated for 16 hours, then isolation of LC by BSA gradient and FACS sorting
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated with Trizol™ (Invitrogen) according to the manufacturers’ instructions. For microarray analysis mRNA was amplified prior to chip-hybridization using the MessageAmp™ Kit of Ambion (Woodward St. Austin, USA)
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Label |
biotin
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Label protocol |
RNA was biotinylated (Enzo Bio Array™HighYield™ RNA transcript labeling kit (Affymetrix, High Wycombe, UK))
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Hybridization protocol |
standard Affymetrix protocol
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Scan protocol |
standard Affymetrix protocol
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Description |
For cell culturing of epidermal cells, an additional digestion with DNAse I (15 min, 130 U/ml) was included. The resulting single cell suspension was cultured in complete medium for 16 hours at a density of 1.5x106 cells/ml in 6-well plates. For sorting, epidermal cells were centrifuged on dense BSA or OptiPrep® (Sigma). The low-density fraction contained 20-35 % LC, which were enriched by FACS sorting of vital MHC-II+ cells using a FACSCalibur (Becton Dickinson, Heidelberg, Germany) to a purity >95 %. Sort purity was verified by re-analysis of samples.
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Data processing |
The resulting cel files were analyzed with the bioconductor affy package using the RMA (robust microarray analysis) algorithm.
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Submission date |
Oct 08, 2008 |
Last update date |
Sep 22, 2009 |
Contact name |
Charlotte Esser |
E-mail(s) |
chesser@uni-duesseldorf.de
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Organization name |
IUF
|
Department |
Molecular Immunology
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Street address |
Auf´m Hennekamp 50
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City |
Dusseldorf |
ZIP/Postal code |
40225 |
Country |
Germany |
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Platform ID |
GPL339 |
Series (1) |
GSE13130 |
Langerhans cells from aryl hydrocarbon receptor deficient mice |
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